Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mtr1g2312 | ATGAATCACGAACAACAATTGATGACAGGATCTTGCACCAACTGTGGGCTTCCAAACCATTCTGAAAAATCTTGTTTTGAAAGACCCCAGAGAGTCCCTGCAAGGTTTCGCCAGAACCTTGTTCCAGAACCGATTGCAAGAGAACTTGTTCCTGCATCTGATGGATGGGACAGATATTTGTTGAAGAAAAAGGAAGACAAAGATAGCACAGGAGGATTCAGAAGCTTACGCCTTCGAGGAGATATCCCCGAATATCTTCTAAAAAAAGTCTCAAAAGACTCCGACGATACGACTGATCTGACAACACATTTTGATCCTCGCACCCGGTTTAATTATAGGGAAAAAATGTCATCGGCAGACAAATATTTTAATGCTGGAAGTCAACTCCAAATGAGTTCTTGGGTGGATAGAGAGGACATTGTTCGAGGTCCTGCTGGGTCATCTGTACCTCATGTAGCAAATGAGGATACATATGCTAGATCGATTCATGTCGGTAATGTTCACTATGCATGCACACCTAAGGAAGTTCAACAGCATTTTCAGTCCTGTGGTACTGTCAACAGAGTCAAAATATTGACAGACAAATTTGGTCGACCGGAAGGATTTGCTTGTGTAGAATTTGTTGAAGCTGATGCTGTTCAGAATGCTCTCGGTTTAAATGGATCTGAATTACATGGCCGACTGCTGAATGTGTCTTCAAAATGCACTCATGTTCCTGAATTGAAGCAGTACAGAAGAAGGCATGCTGGTTTCCGTGGCAGGAGGCCTGTCCGGTCTTCACCATACTTTCCGCCAAATGCTTACAGAAGGGTTCCGAGATATAGAAGACCCACTCGATACCAGCCATACTAG | 852 | 0.4354 | MNHEQQLMTGSCTNCGLPNHSEKSCFERPQRVPARFRQNLVPEPIARELVPASDGWDRYLLKKKEDKDSTGGFRSLRLRGDIPEYLLKKVSKDSDDTTDLTTHFDPRTRFNYREKMSSADKYFNAGSQLQMSSWVDREDIVRGPAGSSVPHVANEDTYARSIHVGNVHYACTPKEVQQHFQSCGTVNRVKILTDKFGRPEGFACVEFVEADAVQNALGLNGSELHGRLLNVSSKCTHVPELKQYRRRHAGFRGRRPVRSSPYFPPNAYRRVPRYRRPTRYQPY* | 284 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mtr1g2312 | 283 | Gene3D | - | 155 | 237 | IPR012677 | - | |
Mtr1g2312 | 283 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 91 | 279 | - | - | |
Mtr1g2312 | 283 | PANTHER | POLYADENYLATE-BINDING PROTEIN 2 | 91 | 279 | - | - | |
Mtr1g2312 | 283 | SUPERFAMILY | RNA-binding domain, RBD | 156 | 256 | IPR035979 | GO:0003676 | |
Mtr1g2312 | 283 | CDD | RRM_II_PABPs | 161 | 232 | - | - | |
Mtr1g2312 | 283 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 160 | 236 | IPR000504 | GO:0003723 | |
Mtr1g2312 | 283 | SMART | rrm1_1 | 161 | 232 | IPR000504 | GO:0003723 | |
Mtr1g2312 | 283 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 163 | 229 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mtr1g2312 | Mtr-Chr1 | 33632109 | 33635893 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mtr1g2312 | 161 | 232 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 34.247 | 4.59e-08 | 52.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mtr1g2312 | K14396 | - | gmx:100527139 | 163.696 |