Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2312 ATGAATCACGAACAACAATTGATGACAGGATCTTGCACCAACTGTGGGCTTCCAAACCATTCTGAAAAATCTTGTTTTGAAAGACCCCAGAGAGTCCCTGCAAGGTTTCGCCAGAACCTTGTTCCAGAACCGATTGCAAGAGAACTTGTTCCTGCATCTGATGGATGGGACAGATATTTGTTGAAGAAAAAGGAAGACAAAGATAGCACAGGAGGATTCAGAAGCTTACGCCTTCGAGGAGATATCCCCGAATATCTTCTAAAAAAAGTCTCAAAAGACTCCGACGATACGACTGATCTGACAACACATTTTGATCCTCGCACCCGGTTTAATTATAGGGAAAAAATGTCATCGGCAGACAAATATTTTAATGCTGGAAGTCAACTCCAAATGAGTTCTTGGGTGGATAGAGAGGACATTGTTCGAGGTCCTGCTGGGTCATCTGTACCTCATGTAGCAAATGAGGATACATATGCTAGATCGATTCATGTCGGTAATGTTCACTATGCATGCACACCTAAGGAAGTTCAACAGCATTTTCAGTCCTGTGGTACTGTCAACAGAGTCAAAATATTGACAGACAAATTTGGTCGACCGGAAGGATTTGCTTGTGTAGAATTTGTTGAAGCTGATGCTGTTCAGAATGCTCTCGGTTTAAATGGATCTGAATTACATGGCCGACTGCTGAATGTGTCTTCAAAATGCACTCATGTTCCTGAATTGAAGCAGTACAGAAGAAGGCATGCTGGTTTCCGTGGCAGGAGGCCTGTCCGGTCTTCACCATACTTTCCGCCAAATGCTTACAGAAGGGTTCCGAGATATAGAAGACCCACTCGATACCAGCCATACTAG 852 0.4354 MNHEQQLMTGSCTNCGLPNHSEKSCFERPQRVPARFRQNLVPEPIARELVPASDGWDRYLLKKKEDKDSTGGFRSLRLRGDIPEYLLKKVSKDSDDTTDLTTHFDPRTRFNYREKMSSADKYFNAGSQLQMSSWVDREDIVRGPAGSSVPHVANEDTYARSIHVGNVHYACTPKEVQQHFQSCGTVNRVKILTDKFGRPEGFACVEFVEADAVQNALGLNGSELHGRLLNVSSKCTHVPELKQYRRRHAGFRGRRPVRSSPYFPPNAYRRVPRYRRPTRYQPY* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2312 283 Gene3D - 155 237 IPR012677 -
Mtr1g2312 283 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 91 279 - -
Mtr1g2312 283 PANTHER POLYADENYLATE-BINDING PROTEIN 2 91 279 - -
Mtr1g2312 283 SUPERFAMILY RNA-binding domain, RBD 156 256 IPR035979 GO:0003676
Mtr1g2312 283 CDD RRM_II_PABPs 161 232 - -
Mtr1g2312 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 236 IPR000504 GO:0003723
Mtr1g2312 283 SMART rrm1_1 161 232 IPR000504 GO:0003723
Mtr1g2312 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 229 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2312 Mtr-Chr1 33632109 33635893 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2312 161 232 Eukaryotic Initiation Factors Gene Family AT2G36660 34.247 4.59e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2312 K14396 - gmx:100527139 163.696