Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2301 ATGGCGGCATCACGGCGGCTCCGGGACCTCCAATCCCAACCTGGCAACAAGATCTGCGTCGATTGCTCTCAGAAGAATCCACAGTGGGCATCAGTCTCCTACGGCATCTTCATGTGCTTAGAATGCTCCGGCAAACACCGTGGTCTCGGCGTTCACATCTCCTTCGTCCGATCCGTCACCATGGATGCTTGGTCCGAAATTCAAATCAAGAAAATGGAAGCTGGTGGTAATGACAATCTCAACGCTTTCCTTGCCAAGTATTCAATTCCGAAGGAAACGGATATTGTTACCAAGTATAACACCAACGCTGCTTCGGTATATCGTGATCGGATTCAGGCTTTGTCGGAAGGTCGGTCGTGGCGTGATCCACCGGTTGTTAAGGAGAATTTAGGTTCTAAGGGAAGGCCGCCGATGGGGCAGAGTCGCCGGATTAATGATTCCGGTTGGGATGATTGGGATAGGGAAGGAGGTTCGGGTGGTGATGTGAGGAGTAAGTCGACGGGGGATTTTAGGAATTTGAACGGCGGTGGTGCACCGGCGAGATCGAGGTCGACGGAGGATATTTATACGCGGTCGCAATTAGAAGCTTCTGCGGCGGGTAAAGAGGGATTTTTTGCGAAGAAGATGGCGGAGAATGAGTCGAGGCCTGAAGGACTTCCGCCTTCGCAGGGTGGGAAGTATGTTGGGTTTGGATCTAGTCCGATGCCTTCGCAGAGGAGTAATCCGCAGCAAAATGATTATTTTTCTGTTGTTTCACAGGGGATTGGGAAGTTGTCATTGGTTGCTGCTTCCGCTGCTAATGCTGTTCAGACTGGCACAAAAGAGATTACTTCTAAGGTCAAGGAAGGCGGTTATGATCAAAAGGTCAACGAAACTGTCACTGTTGTTACTCAAAAGACATCAGAGATTGGTCAAAGGACATGGGGTTTAATGAAAGGGGTTATGGCTTTGGCTTCACAAAAGGTTGAGGAGTACACTAAAGAAAACTCAAATTCGACTACTAATAACTGGCAACGAAATGAGAGTGATAGAAATGGCTACTATCAGGATTTCAATCAAGGGAACAAAGGAGGTAATTCTTCTACTGGAAGAGAACAATCTTCATCAGGGCAATACAAAACTCAAAGCTCAAACTCTTGGGACGATTGGGGCCAAAAAGATAGTTGGAAGGGAGAACCTGCTAATAAAGGATCAACTCCTTATTCATCTGGTGGGCAGTCTGGTACTCACAATCCCAGCTCTTGGGATGATTGGGACCACAAAGATTCTAGGAAGGAAGAACCAGCTAAATCATCGGCTCCCCACAATAATGATGTTGGTTGGGCTGGCTGGGATAATGCAAAAGATGATGGATTTGATAACTTTTATGAAGGTGCATCTAATAAGAAAGCTGCTGGACATAATGGGAAATCAGATGACGCTTGGACAGGGGGTGGCTTTCTCTAA 1446 0.4723 MAASRRLRDLQSQPGNKICVDCSQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDAWSEIQIKKMEAGGNDNLNAFLAKYSIPKETDIVTKYNTNAASVYRDRIQALSEGRSWRDPPVVKENLGSKGRPPMGQSRRINDSGWDDWDREGGSGGDVRSKSTGDFRNLNGGGAPARSRSTEDIYTRSQLEASAAGKEGFFAKKMAENESRPEGLPPSQGGKYVGFGSSPMPSQRSNPQQNDYFSVVSQGIGKLSLVAASAANAVQTGTKEITSKVKEGGYDQKVNETVTVVTQKTSEIGQRTWGLMKGVMALASQKVEEYTKENSNSTTNNWQRNESDRNGYYQDFNQGNKGGNSSTGREQSSSGQYKTQSSNSWDDWGQKDSWKGEPANKGSTPYSSGGQSGTHNPSSWDDWDHKDSRKEEPAKSSAPHNNDVGWAGWDNAKDDGFDNFYEGASNKKAAGHNGKSDDAWTGGGFL* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2301 481 MobiDBLite consensus disorder prediction 325 481 - -
Mtr1g2301 481 Gene3D Arf GTPase activating protein 1 128 IPR038508 -
Mtr1g2301 481 CDD ArfGap_ArfGap1 3 117 - -
Mtr1g2301 481 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Mtr1g2301 481 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Mtr1g2301 481 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Mtr1g2301 481 Pfam Putative GTPase activating protein for Arf 5 109 IPR001164 GO:0005096
Mtr1g2301 481 MobiDBLite consensus disorder prediction 118 187 - -
Mtr1g2301 481 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 399 481 - -
Mtr1g2301 481 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 396 - -
Mtr1g2301 481 MobiDBLite consensus disorder prediction 395 413 - -
Mtr1g2301 481 SMART arf_gap_3 1 120 IPR001164 GO:0005096
Mtr1g2301 481 MobiDBLite consensus disorder prediction 325 384 - -
Mtr1g2301 481 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Mtr1g2301 481 MobiDBLite consensus disorder prediction 414 432 - -
Mtr1g2301 481 MobiDBLite consensus disorder prediction 146 160 - -
Mtr1g2301 481 SUPERFAMILY ArfGap/RecO-like zinc finger 5 111 IPR037278 -
Mtr1g2301 481 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 396 IPR044519 GO:0005096|GO:0016192
Mtr1g2301 481 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 399 481 IPR044519 GO:0005096|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2301 Mtr-Chr1 33489711 33493654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2301 5 87 C2H2 Transcription Factor Family AT4G05330 48.810 6.68e-23 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2301 K12492 - gmx:100806519 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2301 1 33489711 33493654 Mtr1g2301 1 33489711 33493654 ECH
Mtr7g3002 7 46925783 46930050 Mtr1g2301 1 33489711 33493654 PCT