Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2299 ATGGGGGTTTATAATAGAAAACCGGTGGTGAAACGATTAGCATCACCTTCTTCGAAAATCTACCTGTGTTCCGGCGGCGTGATGGTTAAAGTTGCTTTCTACAGGAACTATGGGAAAACATTCAAGAAGCCGCGTCGTCCATACGAGAAGGAGCGATTGGATGCTGAGTTGAAACTGGTCGGAGAGTACGGTCTTAGGTGCAAGAGGGAGCTTTGGAGGGTTCAGTACGCTTTGAGCCGTATCCGTAACAATGCAAGGAATCTGTTGACCTTGGATGAGAAGAATCCTCGTCGTATCTTTGAGGGTGAAGCGCTGTTGAGAAGGATGTTTAAGCATGGTCTTCTTGATGAAACTCAGAACAAACTCGATTATGTCTTGGCTCTCACTGTTGAGAATTTTCTTGAACGCCGTCTTCAGACACTTGCATTCAAATCTGGTATGGCCAAGTCCATTCATCATGCTAGGGTTCTTATCAGGCAGAGACACATCAGGGTTGGGAGGCAGGTTGTGAACATCCCATCATTCATGGTGAGGGTTGATTCACAGAAGCACATTGACTTTTCACTCACAAGTCCTTTTGGTGGTGGTCTTCCCGGTCGCGTGAAGCGAAAGAACCTTAAGGCTGCAGCCAAGAAGGCTTCTGGTGGTGATGGTGATGAGGAGGATGAAGATTAA 675 0.4681 MGVYNRKPVVKRLASPSSKIYLCSGGVMVKVAFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARNLLTLDEKNPRRIFEGEALLRRMFKHGLLDETQNKLDYVLALTVENFLERRLQTLAFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGLPGRVKRKNLKAAAKKASGGDGDEEDED* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2299 224 SMART Ribosomal_S4_2 35 135 IPR001912 GO:0019843
Mtr1g2299 224 ProSiteProfiles S4 RNA-binding domain profile. 136 210 - -
Mtr1g2299 224 TIGRFAM uS4_arch: ribosomal protein uS4 38 193 IPR005710 GO:0003735|GO:0006412|GO:0015935
Mtr1g2299 224 PANTHER 30S 40S RIBOSOMAL PROTEIN 32 224 IPR022801 -
Mtr1g2299 224 Pfam S4 domain 136 179 IPR002942 GO:0003723
Mtr1g2299 224 SUPERFAMILY Alpha-L RNA-binding motif 39 186 - -
Mtr1g2299 224 Pfam Ribosomal protein S4/S9 N-terminal domain 35 135 IPR001912 GO:0019843
Mtr1g2299 224 Gene3D - 135 191 IPR036986 GO:0003723
Mtr1g2299 224 CDD S4 136 180 - -
Mtr1g2299 224 SMART s4_6 136 207 IPR002942 GO:0003723
Mtr1g2299 224 PANTHER 40S RIBOSOMAL PROTEIN S9-2-LIKE 32 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2299 Mtr-Chr1 33455574 33457099 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2299 28 214 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 90.374 7.98e-124 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2299 K02997 - gmx:100807649 340.502