Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2295 ATGGGCGAAGAAGCGGTTTGTGTGCAAGAATTGGTAGATGGAAAGACGGAAAATACGGATGAATCAAGGTTGGAATTGAAACGTGATTATAACCAATGTGTTGCTGATACTGAAGCAAATGTTCCACCCAATAAAAAACAAGCTAAAGAAGTTTCAAACGATGAACTGCGATCGGAAGTTACAAATCCAAATGTTTCTGCAACAGAACATGCACAAACCTTTCATGATATCAGTAGCCAACCGACGGAATCTGAGAATGTTAGCCATGCAGAGTGTGGGGAACTGACGTCTACTGGTTTGGAGAATTCTAGTTCTCATGATACCGTGAGTGATGAAGCTGGTGTTCGGAATAATGATAGTGATAATATTAATAATCTGTGTCAGAATGATAAAGGTACGAGTAGTAACGATGCAGTGTCCCGTGTTGTGATGGAAATCCCGAAGCATGCTAGTTCAACCGGTATTCGAAAGATTACTTTTAAGTTCAGTAAAAGGAAGGAGGATTATGATGATTACCAAACACCTACTGGCTATACCGATGGCAGTGGCAGTGACTATGGATTTGGCTATGGGAATGGCAGTGGATATGGCTACGGATACGGTTATCATGGGGATGATGAATATTTGGCAAATGATGATTATAATAATAATGGATTGGTAGAGAGCTCGTATGGCAGGGGATATGTTCCTTATGAAGATTCGGAGTTGTATTCTGGCAATATGGAATTGAAAATGTCAAAGAAAGTAGTTCCCAACGCCTTCCCCAATAATGTGAAAAAACTATTATCAACCGGTATCCTTGATGGAGCTGCAGTGAAATATATTTACAACCCTGGAAAGGTCGAGCTTGATGGGATTATTGGTGATGGTGGATATCTGTGTGGCTGTTCAATGTGCAGTTACTCTAGAGTGCTCAGTGCCTATGAGTTTGAGCAGCATGCTGGTGCTAAGACCAGACATCCAAATAATCACATATTCCTAGAAAATGGAAAACCAATTTATAGCATTATACATGAAATAAAAACTGCCACAAACAGCACGCCAGACGAGGTTATAAAGAATGTGGCTGGTTCATCTATCAATGAGGGATCCTTCCAGGTTTGGAAAGAAAGTCTCCTACAAAGCAACAAGAAGGTTCCAACTCAAAAAAAATACAGCACAAAGTCTACTGGCATTCCTCATACATACAACAGACCAAGCACCTACACTTACTACTCAGGTATACCGCAGAAGAGAAGTGCTGATGGTTGCACTAAGAAAAGGGACAACGATTTGCACAGGTTACTTTTTATGCCTAATGGCCTACCAGATGGTGCCGAGTTGGCTTACTATGTAAAAGGACAGAAATTACTTGGAGGTTACAAACAAGGAAATGGTATAGTCTGTGGTTGTTGTGATATAGAGATAAGCCCTTCGCAGTTTGAAGCCCATGCTGGAATGGCGGCTAGACGTCAACCTTACCGCCACATATATGCTTCCAATGGATTGACACTTCATGATATAGCTCTCTCTTTAGCAAATGGTCAAAACCTTACTACGGGAGATAGTGACGATATGTGTGCAGTATGTGGAGATGGAGGAGATTTGATTCTTTGCAATGGATGTCCTAGGGCTTTTCATGCAGCCTGCTTGGGTTTACACAGTGTACCAGAGAGTGGTTGGCATTGTTTAAATTGTGAAGATAATACCGGTGATGAAAGAGGTGCGAGGCCAATCATGATACGGTTGACACGGGTTGATAAAGAACCAGAATATGAAGTGGGTGGATGCGTTGTTTGCAGGGCAAATGATTTCAGTGTTGATAAATTTGATGACCGAACAGTAATAATTTGTGATCAGTGTGAGAAGGAGTATCATGTTGGTTGCTTGCGGGACATTGGGCTATGTGAGTTGGAAGAGCTTCCCAAGGATAAGTGGTTTTGTTGCGACGACTGCAATCGAATATATGTGGCTTTGCAGAACTCAGTTTCTGCTGGAGCAGATACCATACCATCTTCCTTGTCGGAACTAATAATCAGGAAGCATGAGGACAGGGGATTATGTACGTATGGAGACATGAATGATATCCAATGGAGAATTTTAAGTGGGAAAAGTCGTTATGCAGAGCATTTACCGTTACTTTCACGAGCTGCTGCAATTTTTCGAGAGTGCTTTGATCCCATCGTTGCAATATCTGGCCGTGACCTGATTCCTGTTATGGTATATGGGCGAAATATTTCTGGCCAAGAATTCGGGGGAATGTATTGCATCGTTTTAATTGTGAATTCTATTGTAGTATCTGCCGGGCTTCTTAGGATTTTTGGCCGCAATATTGCTGAGCTTCCCCTGGTAGCTACAAGTAGAGAGCATCAAGGAAAAGGTTATTTTCAAGCGCTGTTCTCTTGCATAGAGAGGTTGTTGTCTTCTCTAAATGTAGAAAAGCTGGTGCTCCCTGCTGCAGGGGATGCAGAGTCCATTTGGACTAAGAAATTAGGCTTTCACAAGATGAGTGAAGATCAGTTAACCAAACATCTTAAAGAGGTGCAGCTCACCCTCTTCAACAAAACATCAGTGCTGGAAAAGATGGTGCAGGCGACAGAATGA 2583 0.4201 MGEEAVCVQELVDGKTENTDESRLELKRDYNQCVADTEANVPPNKKQAKEVSNDELRSEVTNPNVSATEHAQTFHDISSQPTESENVSHAECGELTSTGLENSSSHDTVSDEAGVRNNDSDNINNLCQNDKGTSSNDAVSRVVMEIPKHASSTGIRKITFKFSKRKEDYDDYQTPTGYTDGSGSDYGFGYGNGSGYGYGYGYHGDDEYLANDDYNNNGLVESSYGRGYVPYEDSELYSGNMELKMSKKVVPNAFPNNVKKLLSTGILDGAAVKYIYNPGKVELDGIIGDGGYLCGCSMCSYSRVLSAYEFEQHAGAKTRHPNNHIFLENGKPIYSIIHEIKTATNSTPDEVIKNVAGSSINEGSFQVWKESLLQSNKKVPTQKKYSTKSTGIPHTYNRPSTYTYYSGIPQKRSADGCTKKRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGNGIVCGCCDIEISPSQFEAHAGMAARRQPYRHIYASNGLTLHDIALSLANGQNLTTGDSDDMCAVCGDGGDLILCNGCPRAFHAACLGLHSVPESGWHCLNCEDNTGDERGARPIMIRLTRVDKEPEYEVGGCVVCRANDFSVDKFDDRTVIICDQCEKEYHVGCLRDIGLCELEELPKDKWFCCDDCNRIYVALQNSVSAGADTIPSSLSELIIRKHEDRGLCTYGDMNDIQWRILSGKSRYAEHLPLLSRAAAIFRECFDPIVAISGRDLIPVMVYGRNISGQEFGGMYCIVLIVNSIVVSAGLLRIFGRNIAELPLVATSREHQGKGYFQALFSCIERLLSSLNVEKLVLPAAGDAESIWTKKLGFHKMSEDQLTKHLKEVQLTLFNKTSVLEKMVQATE* 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2295 860 Gene3D - 737 844 - -
Mtr1g2295 860 ProSiteProfiles Zinc finger PHD-type profile. 517 562 IPR019787 -
Mtr1g2295 860 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 696 848 IPR000182 GO:0016407
Mtr1g2295 860 PANTHER AUTOIMMUNE REGULATOR 1 390 - -
Mtr1g2295 860 PANTHER AUTOIMMUNE REGULATOR 379 857 - -
Mtr1g2295 860 SMART PHD_3 589 646 IPR001965 -
Mtr1g2295 860 SMART PHD_3 519 560 IPR001965 -
Mtr1g2295 860 SUPERFAMILY FYVE/PHD zinc finger 515 561 IPR011011 -
Mtr1g2295 860 ProSitePatterns Zinc finger PHD-type signature. 520 559 IPR019786 -
Mtr1g2295 860 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 588 648 IPR013083 -
Mtr1g2295 860 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 740 833 IPR016181 -
Mtr1g2295 860 ProSitePatterns Zinc finger PHD-type signature. 590 645 IPR019786 -
Mtr1g2295 860 CDD NAT_SF 749 810 - -
Mtr1g2295 860 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 512 569 IPR013083 -
Mtr1g2295 860 Pfam PHD-finger 519 560 IPR019787 -
Mtr1g2295 860 MobiDBLite consensus disorder prediction 36 58 - -
Mtr1g2295 860 CDD PHD1_AIRE 519 559 - -
Mtr1g2295 860 MobiDBLite consensus disorder prediction 97 135 - -
Mtr1g2295 860 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 379 857 - -
Mtr1g2295 860 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 390 - -
Mtr1g2295 860 Pfam Tify domain binding domain 453 502 IPR032308 -
Mtr1g2295 860 Pfam Tify domain binding domain 285 336 IPR032308 -
Mtr1g2295 860 SUPERFAMILY FYVE/PHD zinc finger 585 643 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2295 Mtr-Chr1 33419648 33428608 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2295 1 856 PHD Transcription Factor Family AT3G53680 50.823 0.0 862
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mtr1g2295 TDBD 4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2295 - - gmx:100794242 1381.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2295 1 33419648 33428608 Mtr1g2295 1 33419648 33428608 ECH