Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2289 ATGGAAAATTCAGACCACGACGAACCCAACAACAAGAAGCCTCATCTTCTCACTCCTGTTTCTTCCCGCGTTTCACCAAATTCAACCAACCATTCTCCTAACGGCAAAAATGCTGATGCAGGTCTCTTACAGCTCCAGAATCAGCAGCTTGTTCAGCAGACAGAAACGCAGAAACATGCTTTACAGGATCTTGAAGAAAAGACTAGAGAATTAAAAGAAAGACAAAATTCATACGATGACATATTAATTGCAATTAACCAACGCTGGGATCAGTTGGTTGATGATATGGCTTTTCTCGGGATACAAGCTGGGAGAGGCAAAGATTCTTTGGAAACTTTGGATTACCTCGATAATCTACAAGGCTCCCTTCCTTCGTGTCATCCGGATGATCTACTTCTATGTAGATTAATCCAGAAAGATTCTATTGAGGGAAGCAGTAATGACGAGATTACTAATTATGTTGAGGAAGCCCTTGCTTTGCGTCGGTTATCTACTAGGGAGTTGTTGAAACTCATTCAAGATACCGTTGATGATCAGATGGAAAGAATAGAGGATATAGGTCAGGTTTTACAGGGAGATTTATCCACAGAAGATGTTATCATCCAAATTTCTAAGATTGATGATATGACGAAAAAGGAGGCCGACAATTTTCGTGAAGTGATTGATACTCTCCATGCAAAACACAAGGAGTATACTGTTGGTATTCAGAATTATATAACCGAGTGCTCGCAAGATCAATCTGACATTAAACGCCTTACAGGAGAGCTTGACGAGATCGTGGCTGAACTCGAAGAGAGTAGAAGAAAAATAGTCAGTCTGAAAATGCAAAAGGATGCAGCTATGGGAATGAATTCCTCTAATGCTGACTCATTGAATGGAAACTTGTCTCCTGAGAAGCCTGCAGATAGGGCCATGGGTTTGTCCGAGTTGAAGCACTCAATTGAGGAAGCCAAGATCGTGAATGCTGATCGTCTTTCTGAGCTTCAAGATGCACGGGAAGAAAATCAAATATTGACAAAGAAATTTCAAGAACTTCAGAATGAACTAAATGATGATAAGTATGTACGCAATTCCCGAGTATACTCTTTGGCAAATGATCAACTTCAACACTGGATTGCTGAATTGGACAGATATAAATCATTGGCAGAGTCTCTGCAGGCTGGCAGGGTTAACGTCTCAAAACGGGAGAAGGAGTTGAAGTTGAAATTGGAGTCTGCTGTTAATGCAAGGCATATCCATGACAATTCTGACTCTAGGATTGATGAGCTCAAGCTTCAATTGCAGAAGTGTATTATTGAAAAGAATGATCTTGAAATTACGATGGAAGAGGCCAAACAGGATACTGGGAGAAAAGACATCAAAGCCGAGTTTCGTGTGATGGCTTCAGCTTTATCTAAAGAAATGGGGATGATGGACGCGCAGGTGAAGCGATGGAAAGATGCAGCTCTTGAAGCTGTATCATTACGTGAGAAAGCGCATTCACTAAGAGAAAAATTGAGTGGAAAGACAAGCGAACTCAAGAGCTTTGCAAACAAATGTGCTGAACAGGTTTTGGAAATGAAGTCTTCAAAAGCATTGATTGAAAAGTTACAGGAGGAGAATCGGGAGTTAGAATTTGTTTTGGATATGTATGGCCTAGAAGATTATCAGAAAAGCTTGCCAGAAGTTAGAGAATCTGAAAGGAAAGCTCGCTCTCAAGCTGAAATTCTGAAAAATGCTTTAGATGAACATGGTCTAGAGTTGAGAGTAAGAGCTGCTAATGAAGCTGAAGCTGCTTGTGAACAAAGGCTTGCTGCTGCAGAAGCTGAACTAGAGGAGTTAAGGGCCCAGTTTGATGAAAATGAAAGAAAAAATCTGGAGATGACTGAGGCTATTAAAGTTAAAGAGGCTGAGGCAAAAACCTATATATCTGAAATCGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGCACCAACATCTGTTGCAGCAAGTGGCTGAGAGGGATGACTATAATATCAAGCTTGTATCAGAAAGCGTGAAGGCAAAACAATTACATAGCACTTTACTGTCTGAAAAGCAAGCCTTAGCTGATCAACTTCAACAGATTAATTCTTTGATAGAAAATTCAAAGATGAAGATTGCAAATAGTGAAGAACAGATCAAATTCATTCTATCAGAAGCCGCTAAATGTACTCAAGAAGAAAAACACCTTGCAGCCGCCTTAGAGTTTGCCAGGTGGGAATTGGCTGATGCTGAGAAGGAGTTGAAGTTGCTCAAGTCTGTTGCTTCAGCTTCAGAGAAAGAGTACGACCAAATTCAGAAAGATGTGGAAGCTTGTGAAAAGGAATTGGACAGTGAAAGGAGTTCACGGAAGAAGCTTGAGGAAGAACTAATGCAAGTGAACAACCAAATTGCTGAGCTGAATTCTGAAGGCAGAAAAACTGCAGTACAACAACTTGAAGAAGAAATAAGAGTTTGTAAGAACATGATCAAGTGTACTGTCTGTTCTGACCGTCCAAAGGAGGTTGTGATTGTGAAGTGCTATCATCTGTTCTGCAATCCATGTATACAAAGAAATCTTGAACTCCGTCACCGCAAATGTCCTGCCTGTGGAACAGCATTTGGACAGAGCGATGTTCGTTTTGTTAAAATATGA 2643 0.4052 MENSDHDEPNNKKPHLLTPVSSRVSPNSTNHSPNGKNADAGLLQLQNQQLVQQTETQKHALQDLEEKTRELKERQNSYDDILIAINQRWDQLVDDMAFLGIQAGRGKDSLETLDYLDNLQGSLPSCHPDDLLLCRLIQKDSIEGSSNDEITNYVEEALALRRLSTRELLKLIQDTVDDQMERIEDIGQVLQGDLSTEDVIIQISKIDDMTKKEADNFREVIDTLHAKHKEYTVGIQNYITECSQDQSDIKRLTGELDEIVAELEESRRKIVSLKMQKDAAMGMNSSNADSLNGNLSPEKPADRAMGLSELKHSIEEAKIVNADRLSELQDAREENQILTKKFQELQNELNDDKYVRNSRVYSLANDQLQHWIAELDRYKSLAESLQAGRVNVSKREKELKLKLESAVNARHIHDNSDSRIDELKLQLQKCIIEKNDLEITMEEAKQDTGRKDIKAEFRVMASALSKEMGMMDAQVKRWKDAALEAVSLREKAHSLREKLSGKTSELKSFANKCAEQVLEMKSSKALIEKLQEENRELEFVLDMYGLEDYQKSLPEVRESERKARSQAEILKNALDEHGLELRVRAANEAEAACEQRLAAAEAELEELRAQFDENERKNLEMTEAIKVKEAEAKTYISEIETIGQAYEDMQTQHQHLLQQVAERDDYNIKLVSESVKAKQLHSTLLSEKQALADQLQQINSLIENSKMKIANSEEQIKFILSEAAKCTQEEKHLAAALEFARWELADAEKELKLLKSVASASEKEYDQIQKDVEACEKELDSERSSRKKLEEELMQVNNQIAELNSEGRKTAVQQLEEEIRVCKNMIKCTVCSDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI* 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2289 880 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1 21 880 - -
Mtr1g2289 880 Coils Coil 556 576 - -
Mtr1g2289 880 Coils Coil 249 276 - -
Mtr1g2289 880 Coils Coil 47 81 - -
Mtr1g2289 880 Coils Coil 583 624 - -
Mtr1g2289 880 Pfam Zinc finger, C3HC4 type (RING finger) 827 869 - -
Mtr1g2289 880 CDD RING-HC_BRE1_like 826 867 - -
Mtr1g2289 880 MobiDBLite consensus disorder prediction 15 39 - -
Mtr1g2289 880 Coils Coil 420 447 - -
Mtr1g2289 880 PANTHER RING FINGER PROTEIN-RELATED 21 880 IPR013956 GO:0004842|GO:0010390
Mtr1g2289 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 808 879 IPR013083 -
Mtr1g2289 880 Coils Coil 314 348 - -
Mtr1g2289 880 Coils Coil 513 547 - -
Mtr1g2289 880 Coils Coil 737 806 - -
Mtr1g2289 880 SMART ring_2 828 866 IPR001841 -
Mtr1g2289 880 Coils Coil 688 729 - -
Mtr1g2289 880 ProSitePatterns Zinc finger RING-type signature. 843 852 IPR017907 -
Mtr1g2289 880 SUPERFAMILY RING/U-box 827 871 - -
Mtr1g2289 880 MobiDBLite consensus disorder prediction 1 39 - -
Mtr1g2289 880 ProSiteProfiles Zinc finger RING-type profile. 828 866 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2289 Mtr-Chr1 33344919 33358347 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2289 828 875 RAD5 or RAD16-like Gene Family AT5G05130 35.417 6.41e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2289 K10696 - gmx:100796610 1234.55