Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2279 ATGTCGTTCGACAATCAACCATTTTGGATGGGAAAGAGTTCTGGGAATTTGAATGACAGTGACGACATGACATATGAGAATTCTTCTAGACTCGAGTCAAAGCGTTCTAATCAGTCCTTCATGGATGGCCTTGAAGTGGATCTGTTTCCCAATAAGAAACAAGCAGTAGAGGCTCCAAACAGTTTATCGTCAGGAATGCTCAGCTCAAATATTTTGTCATGGGGAAATTCTACTCTTCACTCTTTAACTGGCCATTTTACTTCACAACTATTTGATCCTGGTGCTGCAATTATGAATTTTGAAGACACAAATGTTTGCCCTTTAACCATAGATAATAAGTTGAGTGCGGAAAGAAAGGATATCTTGGATCCTTTTGGGGGCGATGCCTCATTTGGTTTATCAATGTCAACTACACTAGAAGATTCTCAACCAGTTTTTAATCACAATGGGATTAGAAAAGTCAAAGTTAATGAGGTGAAGGAGAAGGAGTCTGAGAATTTCATGTCTGTTCCAAGCAATAATCCCTATGATGGAGGGGTTAGCAACATTGTGTCAAATACTCATGCATTCAAGGAAGGTGATTATTCAATATCAACATGTCTCTCATACAACAAAGGGGATGCCAATGTAATATTGACGGGTGGCGCTTTTGACAGGACAGAGAACAATTTAGTGTCGATGAGTCAATCTTATAACAAGGGAGATGGCAAGTTATCAATACCTTCAACATACACAGATATTTGTACTGCAATATCAATGGATGAAGGGTACAGTAATGTAGATAGTAATGTTGTGTCTATTGCTCAAGCTTACAACAAGGCCCATGACAATTTTATGTTAAGTAACCACTTATTCAATAAGGCTGGAGATGGCACCATATCAATGGGTAACACTTACCATCAGAGGGGTAATGACATGCCATTTGTTTCTTGTTCTTATAATAAAGGAGAAAGCAGTATTATATCCTTTGGTGGCTGCGACGACGACGATGCAACCCCATCTGACTTATTTGTTTCCGACTACGGGCTGTTTATGGGTCAGGCGCCTTCACATATGTCACAAGTTGCAAAAGAAAGAGGTTTGGTTAGATCAAGCTCTAAAGTACCTCTAAGTACAGGTCAGACGTCTGCATCTGAAACTGAAAATGTTCCCAAGACAAAAGAGGAGATGAAAATGTCCAAAAAGGCTACTTCAAATAACTTCCCTTCAAACGTCAGAAGTTTGCTATCCACTGGTATGCTGGATGGTGTCTCTGTAAAGTATAAAGCTTGGTCACGGGAGAAGGAACTTCGAGCTGTTATAAAAGGTGCTGGATATTTGTGCAGCTGTCCGTCGTGTAGTTTTTCCAAGGTTATTAACGCATACGAGTTTGAAAGGCACGCTGGTTGCAAGACGAAACACCCAAATAATCATATTTACTTTGAGAATGGGAAAACCATATATGGAGTGGTACAAGAGCTCAGGAGCACTCCACAGAATATGTTATTTGAAGTTATTCAGACAATAACTGGTTCACCTATCAATCAGAAATCCTTCTGCATTTGGAAAGAATCCTTTTTGGCAGCAGCACGTGAGCTCCAGCGCATATGTAGAAAAGCAATTGTTATAAAGAAGCAAATTTGA 1623 0.3968 MSFDNQPFWMGKSSGNLNDSDDMTYENSSRLESKRSNQSFMDGLEVDLFPNKKQAVEAPNSLSSGMLSSNILSWGNSTLHSLTGHFTSQLFDPGAAIMNFEDTNVCPLTIDNKLSAERKDILDPFGGDASFGLSMSTTLEDSQPVFNHNGIRKVKVNEVKEKESENFMSVPSNNPYDGGVSNIVSNTHAFKEGDYSISTCLSYNKGDANVILTGGAFDRTENNLVSMSQSYNKGDGKLSIPSTYTDICTAISMDEGYSNVDSNVVSIAQAYNKAHDNFMLSNHLFNKAGDGTISMGNTYHQRGNDMPFVSCSYNKGESSIISFGGCDDDDATPSDLFVSDYGLFMGQAPSHMSQVAKERGLVRSSSKVPLSTGQTSASETENVPKTKEEMKMSKKATSNNFPSNVRSLLSTGMLDGVSVKYKAWSREKELRAVIKGAGYLCSCPSCSFSKVINAYEFERHAGCKTKHPNNHIYFENGKTIYGVVQELRSTPQNMLFEVIQTITGSPINQKSFCIWKESFLAAARELQRICRKAIVIKKQI* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2279 540 PANTHER PROTEIN, PUTATIVE-RELATED 5 532 - -
Mtr1g2279 540 PANTHER AUTOIMMUNE REGULATOR 5 532 - -
Mtr1g2279 540 MobiDBLite consensus disorder prediction 365 381 - -
Mtr1g2279 540 MobiDBLite consensus disorder prediction 364 388 - -
Mtr1g2279 540 MobiDBLite consensus disorder prediction 12 34 - -
Mtr1g2279 540 Pfam Tify domain binding domain 433 487 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2279 Mtr-Chr1 33184903 33187911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2279 330 519 PHD Transcription Factor Family AT3G53680 44.388 1.10e-44 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2279 - - mtr:MTR_1g067750 1083.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2279 1 33184903 33187911 Mtr1g2279 1 33184903 33187911 ECH