Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2276 ATGAGAGACGAAAGAGTAGAGAACATAGATTTGGCAAATTGTCTAATTCTACTCTCTCATCCCAAAGAAACCAAACCAAAGAAACATTTTAGTCCTGTGGAATTTGAGTGCACCACATGCAACCGCAAGTTCTCTTCGTTTCAAGCCCTAGGTGGCCATAGGGCTAGTCACAAAAGGCCCAAACTAGATACCTTGAAACTCAAGCTACATGCTCAAACTTTAGGTTTGTTGAATAACCCCAAAATGCATGGGTGCTACATTTGTGGTAAAGAATTTTCTCTTGGCCAGGCTTTGGGAGGACATATGAGAAGGCACAAGATTAGCGTCAACGAGGGATTTTCTTCGGTGAAGAAAAATAAGGTTGTTGGAAAAATCCCAACATTAAAAAGATTGAATAGTAAGAGGGTTATGTGCTTGGACTTGAACTTAACACCTTTGCAGAATGACTTGAAGTTATTGTTCGGAAATATGGCACCTAAAGTTGATTCATTTTTTTGA 498 0.3936 MRDERVENIDLANCLILLSHPKETKPKKHFSPVEFECTTCNRKFSSFQALGGHRASHKRPKLDTLKLKLHAQTLGLLNNPKMHGCYICGKEFSLGQALGGHMRRHKISVNEGFSSVKKNKVVGKIPTLKRLNSKRVMCLDLNLTPLQNDLKLLFGNMAPKVDSFF* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2276 165 PANTHER ZINC FINGER PROTEIN ZAT5 3 160 - -
Mtr1g2276 165 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 3 160 - -
Mtr1g2276 165 Gene3D Classic Zinc Finger 33 105 - -
Mtr1g2276 165 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Mtr1g2276 165 SUPERFAMILY beta-beta-alpha zinc fingers 35 105 IPR036236 -
Mtr1g2276 165 Pfam C2H2-type zinc finger 35 60 - -
Mtr1g2276 165 Pfam C2H2-type zinc finger 83 106 - -
Mtr1g2276 165 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
Mtr1g2276 165 SMART c2h2final6 35 57 IPR013087 -
Mtr1g2276 165 SMART c2h2final6 83 105 IPR013087 -
Mtr1g2276 165 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 105 IPR013087 -
Mtr1g2276 165 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2276 Mtr-Chr1 33151029 33151715 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2276 3 165 C2H2 Transcription Factor Family AT2G37430 45.029 1.06e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr1g2276 zf-C2H2_6 5.8e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2276 - - aprc:113870747 233.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4403 1 55759088 55760092 Mtr1g2276 1 33151029 33151715 ECH
Mtr1g2276 1 33151029 33151715 Mtr1g2276 1 33151029 33151715 ECH