Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mtr1g2275 | ATGATGAAAAGACAAAGAGAAAACGAAGAAAAAGAGAGCATAGATTTAGCAACAACTCTAATGTTACTATCTTCTCGTATAACCCAACAAAACAAAACATATTCTCCAGTTGAGTTTGAGTGCAAAACTTGCAACCGTAAATTCTCATCTTTTCAAGCCCTAGGTGGTCACAGGGCAAGTCACAAGAAGCTGAAACTTCTTGATTCAGAAGAAGCACACAAAGTGAATATTCATAATAATAAGCCCAAAATGCATCAATGTTCAATTTGTGGACAAGAATTCAAACTTGGTCAAGCTTTGGGTGGACACATGAGAAGACATAGGATTAATAATGAAGGGTTTTCATCTTCTTCAATAAATTATCAAGTGATAGCAAAATCTTCTCCTGTTTTGAAAAGATCGAATAGCAAGAGAGTTATGATCATGGAATTGGATTTGAATTTGACACCTTTAGAAAATGACTTGAAGTTGTTGTTTGGAAACAAGGCACCTAAAGTTGACAATTCTTTGTTCTGA | 516 | 0.3469 | MMKRQRENEEKESIDLATTLMLLSSRITQQNKTYSPVEFECKTCNRKFSSFQALGGHRASHKKLKLLDSEEAHKVNIHNNKPKMHQCSICGQEFKLGQALGGHMRRHRINNEGFSSSSINYQVIAKSSPVLKRSNSKRVMIMELDLNLTPLENDLKLLFGNKAPKVDNSLF* | 172 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mtr1g2275 | 171 | Pfam | C2H2-type zinc finger | 39 | 63 | - | - | |
Mtr1g2275 | 171 | Pfam | C2H2-type zinc finger | 85 | 108 | - | - | |
Mtr1g2275 | 171 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 85 | 112 | IPR013087 | - | |
Mtr1g2275 | 171 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 41 | 61 | IPR013087 | - | |
Mtr1g2275 | 171 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 2 | 165 | - | - | |
Mtr1g2275 | 171 | PANTHER | C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN | 2 | 165 | - | - | |
Mtr1g2275 | 171 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 39 | 66 | IPR013087 | - | |
Mtr1g2275 | 171 | Gene3D | Classic Zinc Finger | 77 | 138 | - | - | |
Mtr1g2275 | 171 | Gene3D | Classic Zinc Finger | 9 | 76 | - | - | |
Mtr1g2275 | 171 | SUPERFAMILY | beta-beta-alpha zinc fingers | 39 | 107 | IPR036236 | - | |
Mtr1g2275 | 171 | SMART | c2h2final6 | 39 | 61 | IPR013087 | - | |
Mtr1g2275 | 171 | SMART | c2h2final6 | 85 | 107 | IPR013087 | - | |
Mtr1g2275 | 171 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 87 | 107 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mtr1g2275 | Mtr-Chr1 | 33144755 | 33145542 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mtr1g2275 | 2 | 167 | C2H2 Transcription Factor Family | AT2G37430 | 46.667 | 3.71e-44 | 142 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Mtr1g2275 | zf-C2H2_6 | 2e-08 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mtr1g2275 | - | - | lja:Lj5g3v0614980.1 | 214.157 |