Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2275 ATGATGAAAAGACAAAGAGAAAACGAAGAAAAAGAGAGCATAGATTTAGCAACAACTCTAATGTTACTATCTTCTCGTATAACCCAACAAAACAAAACATATTCTCCAGTTGAGTTTGAGTGCAAAACTTGCAACCGTAAATTCTCATCTTTTCAAGCCCTAGGTGGTCACAGGGCAAGTCACAAGAAGCTGAAACTTCTTGATTCAGAAGAAGCACACAAAGTGAATATTCATAATAATAAGCCCAAAATGCATCAATGTTCAATTTGTGGACAAGAATTCAAACTTGGTCAAGCTTTGGGTGGACACATGAGAAGACATAGGATTAATAATGAAGGGTTTTCATCTTCTTCAATAAATTATCAAGTGATAGCAAAATCTTCTCCTGTTTTGAAAAGATCGAATAGCAAGAGAGTTATGATCATGGAATTGGATTTGAATTTGACACCTTTAGAAAATGACTTGAAGTTGTTGTTTGGAAACAAGGCACCTAAAGTTGACAATTCTTTGTTCTGA 516 0.3469 MMKRQRENEEKESIDLATTLMLLSSRITQQNKTYSPVEFECKTCNRKFSSFQALGGHRASHKKLKLLDSEEAHKVNIHNNKPKMHQCSICGQEFKLGQALGGHMRRHRINNEGFSSSSINYQVIAKSSPVLKRSNSKRVMIMELDLNLTPLENDLKLLFGNKAPKVDNSLF* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2275 171 Pfam C2H2-type zinc finger 39 63 - -
Mtr1g2275 171 Pfam C2H2-type zinc finger 85 108 - -
Mtr1g2275 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Mtr1g2275 171 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Mtr1g2275 171 PANTHER ZINC FINGER PROTEIN ZAT5 2 165 - -
Mtr1g2275 171 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 2 165 - -
Mtr1g2275 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Mtr1g2275 171 Gene3D Classic Zinc Finger 77 138 - -
Mtr1g2275 171 Gene3D Classic Zinc Finger 9 76 - -
Mtr1g2275 171 SUPERFAMILY beta-beta-alpha zinc fingers 39 107 IPR036236 -
Mtr1g2275 171 SMART c2h2final6 39 61 IPR013087 -
Mtr1g2275 171 SMART c2h2final6 85 107 IPR013087 -
Mtr1g2275 171 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2275 Mtr-Chr1 33144755 33145542 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2275 2 167 C2H2 Transcription Factor Family AT2G37430 46.667 3.71e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr1g2275 zf-C2H2_6 2e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2275 - - lja:Lj5g3v0614980.1 214.157