Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2271 ATGGACAAAATCAAATCTCACCGCACCAACTCCAAGCTCCATCTTCCTCAAGGGAAAGAGCAGATTCATAAACAACAACAACATCCGGATTTGTCTCCTGATTCTAGTTTATCCTGTGGCAAGGTTGCAGAGAAAGATTCGTTTTCATTTAAATTTGGGTGGAAATCTTCTAAACAATCTGTTGGAACTCCAATTAAGAAGTTATTAGCTGAGGAGATGTCACCAGTGACTGAATCCAAGAGAAGATCCCCTGGTGTTATAGCCAGATTGATGGGTCTTGATGGTCTTCCGTCTCAGCAGCCTACTAATAAGCAGCACAAGGATCTACAGAAACCAACGCCTTTAGAGAAAAATCGAAGCAGAGGAGCGTCAAATGACGGCCGATCGTCTAGGAGAAGCTCAAGGGATCAGGAAGAATTTAAGGATGTATTTGAGGTCTCGGAGATCCCAAAGGTAGAGAGTGGTAGGTATTCATCTTCAGATTTGAAGGACGGTGAAGAAGAAATGTCATTCATTGAACAGAAGTTCATGGATGCCAAACGCCTAGCGACTTATCAAGATTTTCAGTCTTCGCAGGAATTCCATGATACACTTGAGGCATTGGACTCTAATAAGGATCTTCTGCTAAAATACTTGAAGCGGCCAGACTCTTTGTTTAAAAAGCATTTGAATGATCTGCAAGCTACCCCTTTCCAATCACATTCCGGTCATGTAGAATCAACCAATATGGAGAACTTTGAAAATGATTTCAATTGGAGGTCAGATAGAGAGACAACAGCGGTGAATTACAACAGGTTTCATCAGAAGCATCGCGATGGTTATCATGGCCAATTCGACAAAAGACGTGCGATGCATAATTCACCAAGATCTTCAAAGATTGTTGTCCTAAAACCTAACATGGGAAAATTTCAGAGTGGTATTAGAATTGAATCCTCACCTTGTTCTCCGCATAATTTTCTGCCAGAACATGGAAATCATGTTGAATTTTCAGATGTCAGATTTAGAGATACTGAACTGTATCAAAAAATAAATTTGCCTGACAGTGCAAGGTCTTTTAGGCACAATTCTTTGGAATCTAGAGAAATTGCAAAGGAAGTAACTAGGCAAATGAAAAACAATCTGAGCAATGGTTGCACGATGTCTTCCTCTCCTAGATTTAAAGGATACTCTAAACATGATAGTTCAAGCAGTGCTTCTGGGAATGAATCTCCAGAGGAAATAACAGCAACTTTGGGTAAGCCGTTTGACTTAAATAGACGTAGCAGACGGTCACCCCGTCCTAGTGAATCATCTGTGAGTAGAGAGGCAAAGAAGAGATTATCAGAGAGATGGAAGATGGCACACAAGTCTCAAGAGGTGCAAGGCACCAGCAGGAGCAGCACATTGGCTGATATGCTAGCGTTCCCTGGTAAGAGAATGAAGGGTACACGTTTTGACAGCCTGCCTAGTGGGGAAGGTTTCAATGATAAGTTTGCTCGCAACGGCGAACCTTCTGAGTTGGTTGAACCACTGGGTATCAGCAGCAAGGATGGTTGGAGGGATGCATGTATTAGTAGTTTGTCAAGGTCGAGATCTCTTCCTGCTTCATCTACTGTCTTTGGAAGTCCTAGAACATTCTTGCGTGCTGAAGCACTTCGTAATGATCGATATATGGTGCCAAAGGACCTTAAACGGGAGAGGAGAAGAGTGACAAAGAGTCTTGATCATAGACATGGTATGAATTCTAGAAGCACAATATCTGGTCACAAGAAGTCTTGGTCTGTGCATTCACTGAAGCAGGAAGTTAATGATTTCTCTCCCGACTTAAATGAAGTTCAAAATAACATGAACACCAATCTTGAAGAAGATTCACCCAATCTCGAGGTTCTGGCTCCTGAAACCTTTGAGCCCCTTAGAGATAAAAGTGCTGTTTGTGATGATGTTTCGGATGTAGCAGATGAAAACACTGTTGGGCCTTCTGAATCTTCTTCGGATAAGGTTCTTCCTGGATCATCGGCTCGTGTCTTAGTAAAAGGCGACAGTCGTGTTGTTGACGAAGAAAATTCAATGCAAGAGGACGTATCAGCTGGTTCTACTGGTGGAATTTCAGTCCTCTCTGAAGCACCTGTACCTGGACACGAATCTCCATGCTGTAAAGATGCTGATCAACCCAGTCCAATCTCAGTTCTTGATCCTTCTTTTACAGATGATCTGTCATCTTGCTCTGAATGTTTTGGAAGTGTCAGTGCTGACCTACAAGGGCTTCGAATGCAACTCCAGTTGCTGAAGTTGGAATCTGAAGAACATGAGGAGGGACCTATGCTAGTTTCAAGTGACGAAGATGGCGTGGAAGTATCTTCTAGAATGTTAGAAGGAAATGCATTATGGAGAACTGAAGATAGCTGGGAGTCTTCTTACATTATTGATGTTTTGTCTGAATCTGCTATTGCTGATGCTCAAACTGATAATAATTTGGAAGTTTGGCAATCTCTAGAATGCCCTGTGAGTGTTTCTGTGTTTGAAGATCTGGAAGAGAGGTACAGTGATTTGACTACTTGTTCAAGGTCTGAAAGGAGATTGCTTTTCGACCGCATCAATTCAGGAATTGTGAAGATTCATGAGCAATCTACTGACCCACAGCCATGGGTGAGAAATGCAGTCAAACCTTTTGGATCAAAAAGGATTAACGGGCTTCAAGATGGTCTTTTCCAGATGCTAGGGAACCAAGGAAAGGTAGAGGATGATGTCCTGAGTAAGTTGCTGATTGAGGAGTCTCAGTGGTTGAAGTTGAGAGATGACATTGATGTAATAGGCATAGAATTTGAGAGATTGATATTAGATGAATTAGTGGCAGAAATAGTCGGTATCTAG 2850 0.4207 MDKIKSHRTNSKLHLPQGKEQIHKQQQHPDLSPDSSLSCGKVAEKDSFSFKFGWKSSKQSVGTPIKKLLAEEMSPVTESKRRSPGVIARLMGLDGLPSQQPTNKQHKDLQKPTPLEKNRSRGASNDGRSSRRSSRDQEEFKDVFEVSEIPKVESGRYSSSDLKDGEEEMSFIEQKFMDAKRLATYQDFQSSQEFHDTLEALDSNKDLLLKYLKRPDSLFKKHLNDLQATPFQSHSGHVESTNMENFENDFNWRSDRETTAVNYNRFHQKHRDGYHGQFDKRRAMHNSPRSSKIVVLKPNMGKFQSGIRIESSPCSPHNFLPEHGNHVEFSDVRFRDTELYQKINLPDSARSFRHNSLESREIAKEVTRQMKNNLSNGCTMSSSPRFKGYSKHDSSSSASGNESPEEITATLGKPFDLNRRSRRSPRPSESSVSREAKKRLSERWKMAHKSQEVQGTSRSSTLADMLAFPGKRMKGTRFDSLPSGEGFNDKFARNGEPSELVEPLGISSKDGWRDACISSLSRSRSLPASSTVFGSPRTFLRAEALRNDRYMVPKDLKRERRRVTKSLDHRHGMNSRSTISGHKKSWSVHSLKQEVNDFSPDLNEVQNNMNTNLEEDSPNLEVLAPETFEPLRDKSAVCDDVSDVADENTVGPSESSSDKVLPGSSARVLVKGDSRVVDEENSMQEDVSAGSTGGISVLSEAPVPGHESPCCKDADQPSPISVLDPSFTDDLSSCSECFGSVSADLQGLRMQLQLLKLESEEHEEGPMLVSSDEDGVEVSSRMLEGNALWRTEDSWESSYIIDVLSESAIADAQTDNNLEVWQSLECPVSVSVFEDLEERYSDLTTCSRSERRLLFDRINSGIVKIHEQSTDPQPWVRNAVKPFGSKRINGLQDGLFQMLGNQGKVEDDVLSKLLIEESQWLKLRDDIDVIGIEFERLILDELVAEIVGI* 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2271 949 MobiDBLite consensus disorder prediction 1 40 - -
Mtr1g2271 949 Pfam DUF761-associated sequence motif 79 100 IPR032795 -
Mtr1g2271 949 MobiDBLite consensus disorder prediction 648 662 - -
Mtr1g2271 949 Coils Coil 745 765 - -
Mtr1g2271 949 MobiDBLite consensus disorder prediction 109 145 - -
Mtr1g2271 949 PANTHER AFADIN 18 947 - -
Mtr1g2271 949 MobiDBLite consensus disorder prediction 368 459 - -
Mtr1g2271 949 MobiDBLite consensus disorder prediction 564 585 - -
Mtr1g2271 949 Pfam Protein of unknown function (DUF3741) 173 217 IPR022212 -
Mtr1g2271 949 MobiDBLite consensus disorder prediction 416 449 - -
Mtr1g2271 949 MobiDBLite consensus disorder prediction 368 406 - -
Mtr1g2271 949 MobiDBLite consensus disorder prediction 70 145 - -
Mtr1g2271 949 MobiDBLite consensus disorder prediction 1 27 - -
Mtr1g2271 949 PANTHER AFADIN 18 947 - -
Mtr1g2271 949 MobiDBLite consensus disorder prediction 645 665 - -
Mtr1g2271 949 Pfam Domain of unknown function (DUF4378) 797 945 IPR025486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2271 Mtr-Chr1 33093590 33099274 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2271 61 947 TRM (TON1 Recruiting Motif) Superfamily AT3G53540 37.433 9.02e-144 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2271 - - ccaj:109788117 1164.06