Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2268 ATGGCAATTAAGATGTTCGAGTTGAGGAGCAAAACCAAAGCTGATTTGCTGAGCCAGCTGAAGGATCTGAAGGCGGAGCTCGCTTTGCTCCGAGTCGCCAAAGTCACCGGCGGTGCACCTAACAAGCTCTCTAAAATCAAAGTTGTGAGGCTTTCAATTGCACAAGTGTTGACTGTGATTTCACAGAAGCAGAAAGCTGCGCTGAGAGAGGTTTATAAGAATAAAAAGTATTTACCACTTGACCTTCGTCCCAAGAAGACTCGTGCTATTAGAAGACGCCTTACCAAACACCAGGCATCATTGAAGACAGAACGAGAGAAGAAGAAGGAGATATACTTTCCACTAAGAAAGTATGCAATCAAAGCTTAG 369 0.4417 MAIKMFELRSKTKADLLSQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREVYKNKKYLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEIYFPLRKYAIKA* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2268 122 Coils Coil 13 33 - -
Mtr1g2268 122 SUPERFAMILY Ribosomal protein L29 (L29p) 3 64 IPR036049 GO:0003735|GO:0005840|GO:0006412
Mtr1g2268 122 Pfam Ribosomal L29 protein 7 63 IPR001854 GO:0003735|GO:0005840|GO:0006412
Mtr1g2268 122 CDD Ribosomal_L29_HIP 7 63 - -
Mtr1g2268 122 PANTHER 60S RIBOSOMAL PROTEIN L35 3 121 IPR045059 GO:0000463|GO:0022625
Mtr1g2268 122 TIGRFAM L29: ribosomal protein uL29 7 63 IPR001854 GO:0003735|GO:0005840|GO:0006412
Mtr1g2268 122 PANTHER 60S RIBOSOMAL PROTEIN L35-LIKE 3 121 - -
Mtr1g2268 122 Hamap 50S ribosomal protein L29 [rpmC]. 1 63 IPR001854 GO:0003735|GO:0005840|GO:0006412
Mtr1g2268 122 Gene3D - 1 76 IPR036049 GO:0003735|GO:0005840|GO:0006412
Mtr1g2268 122 Gene3D - 77 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2268 Mtr-Chr1 33047176 33049486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2268 3 121 Cytoplasmic Ribosomal Protein Gene Family AT2G39390 88.235 9.74e-70 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2268 K02918 - gmx:100305671 215.698