Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2264 ATGGGTAACTCACACGGACATCATCGCAAACACCGTTTTTCTGTCCCTAACAACACGGTTCCTCCACCACCTTATAAATACGAAAACTCTCAACATCACTATCCACCAAACCAAAACCAAGGTACTTCCAATTCCAACATCACCATGACAACTTTGCCTTACGCTAACGCCGACATCTCTCTCCGCTCCCTCGCTGCTCAAGCTGAAGGCTTTGGCCGCTGCGCTATCGGTGGACTTCATGGTTCTCTTTATCATGTTACATCACTCTTAGATGATGGACCAGGATCATTGCGTGACGCGTGTCGCAAAAAAGAACCTTTGTGGATTGTTTTTGAGGTTTCGGGTACAATTCATCTTTCGTCTTACTTGAGTGTGTCGTCATACAAGACCATTGATGGAAGGGGCCAAAAGATTAAGCTGACTGGAAAGGGGCTTAGGCTGAAAGAATGTGAACATGTAATCATTTGTAATTTAGAGATAGAAGGCGGCAGAGGACCTGATGTTGATGCTATTCAGATCAAACCTAACTCAAAACATATATGGATAGATCGTTGCACTTTGAGTGATTTTGAAGATGGGCTCATTGATATCACTCGAGGCAGCACTGATATTACTATTTCAAGGTGTCATTTTCATCAGCATGACAAAACAATACTCATTGGATCAGATCCCAAACATGTTGATGATAGATGCATGAAGGTTACCATACACCACTGTTTTTTCGACGGTACTCGACAGAGACATCCTCGTGTTAGGTTTGCAAAAGTACACCTGTACAATAATTACTCCAGAAATTGGGGCATATATGCTGTTTGTGCAAGTGTGGAATCCCAGATATTCTCACAACATAATATCTATGAAGCGGGCCAGAAGAAAGTTGCTTTTAAGTATCTTCATGAGAAGGCAGCAGACAAAGATGCTGAAGCAACTGGCCACATAATTTCTGAAGGAGACTTATTCATAAATGGTTCTCAATCAGGGTTGATGACAGAGAATGTTGGTTGTAACAAGTTTCATCCTGGTGAACACTATCAGACATGGACAGTGGAACCTCCTACAGATGATCTAAAGCAAGTTCTTCATCACTGTACTGGATGGCAATCTGTTGCGAGGCCAGCGGATCAAGCCGTTTGA 1134 0.4268 MGNSHGHHRKHRFSVPNNTVPPPPYKYENSQHHYPPNQNQGTSNSNITMTTLPYANADISLRSLAAQAEGFGRCAIGGLHGSLYHVTSLLDDGPGSLRDACRKKEPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQKIKLTGKGLRLKECEHVIICNLEIEGGRGPDVDAIQIKPNSKHIWIDRCTLSDFEDGLIDITRGSTDITISRCHFHQHDKTILIGSDPKHVDDRCMKVTIHHCFFDGTRQRHPRVRFAKVHLYNNYSRNWGIYAVCASVESQIFSQHNIYEAGQKKVAFKYLHEKAADKDAEATGHIISEGDLFINGSQSGLMTENVGCNKFHPGEHYQTWTVEPPTDDLKQVLHHCTGWQSVARPADQAV* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2264 377 MobiDBLite consensus disorder prediction 1 46 - -
Mtr1g2264 377 SUPERFAMILY Pectin lyase-like 67 369 IPR011050 -
Mtr1g2264 377 PANTHER PECTATE LYASE 18-RELATED 45 372 IPR045032 GO:0030570
Mtr1g2264 377 Gene3D - 52 358 IPR012334 -
Mtr1g2264 377 PANTHER PECTATE LYASE 45 372 - -
Mtr1g2264 377 MobiDBLite consensus disorder prediction 31 46 - -
Mtr1g2264 377 PRINTS Pollen allergen Amb family signature 67 84 IPR018082 -
Mtr1g2264 377 PRINTS Pollen allergen Amb family signature 122 138 IPR018082 -
Mtr1g2264 377 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Mtr1g2264 377 SMART amb_all 94 292 IPR002022 -
Mtr1g2264 377 Pfam Pectate lyase 123 285 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2264 Mtr-Chr1 33023554 33026661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2264 89 377 Polysaccharide Lyase AT3G55140 73.356 1.28e-164 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2264 K01728 - gmx:100814368 623.624