Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2253 ATGGAAGAAACAACATCAACCATCTTGGCAGCACTTTCATCTCTCCCTCCTTCCCACCTCACAAACCTCACTAACACCATTCTCTCCTCCACCCGCCGCCACCACCGCCGTCTCACTTTCCTCCTTTCCTCCCCATCACTCTTCTCACTAACTCTTCACCACCTTCACACTCTATCTCTTCAACAAAAAACTCTCCTCATTTCACGCCACCTCCTTTCCTTTCTACACCTCCTCACTCAATCAAACAACCCCACCTCACCTCTTCCACCTCCTGTTTCAACTTCCATGAGAGAACGTGACACCGACGCTGTGTTACTCCTTCTGTTGTTCTGTGAAACACATAAATACAACCCAGAAGCTTTAACCGCACCGTTTTCACACTGGAGGCTAAACTTGAACAAAATCTTCTCCAACACATTGTTAACGCTTTCTTATTCTTCTGCACCACCGCTTGGTGCTTGTTTTGGTTCGGTTTTGATTCCGTTTATCGAGACGGTGAGTCGATGTTGGAGATTGGTAGGTGTTTTGGGTTGTGAAGAAGGGAAAGAAGTGAAGGAGGTGGCGGCTTCGGCGGCGACGGTGGTTTCTTTGCCGGCGGTGGAGGTGAGTGTTGGTGGGAGAGAGTGTGTGATATGTAAAGAAGAGATGCAAGTAGGGAGAGACGTGTGTGAGTTGCCATGTCAGCATTTGTTTCATTGGATGTGTATTTTACCATGGTTGGGAAAGAAGAACACGTGTCCTTGTTGTAGGTTTCGGTTACCGTCCGATGATGTTTTTGGAGAGATCCAACGGTTGTGGGAAGTCTTGGTTAAAATTAGTGCGAAACATATATAA 834 0.47 MEETTSTILAALSSLPPSHLTNLTNTILSSTRRHHRRLTFLLSSPSLFSLTLHHLHTLSLQQKTLLISRHLLSFLHLLTQSNNPTSPLPPPVSTSMRERDTDAVLLLLLFCETHKYNPEALTAPFSHWRLNLNKIFSNTLLTLSYSSAPPLGACFGSVLIPFIETVSRCWRLVGVLGCEEGKEVKEVAASAATVVSLPAVEVSVGGRECVICKEEMQVGRDVCELPCQHLFHWMCILPWLGKKNTCPCCRFRLPSDDVFGEIQRLWEVLVKISAKHI* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2253 277 Pfam Ring finger domain 208 250 IPR001841 -
Mtr1g2253 277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 261 IPR013083 -
Mtr1g2253 277 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 274 - -
Mtr1g2253 277 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC 2 274 - -
Mtr1g2253 277 SUPERFAMILY RING/U-box 203 255 - -
Mtr1g2253 277 ProSiteProfiles Zinc finger RING-type profile. 209 250 IPR001841 -
Mtr1g2253 277 SMART ring_2 209 249 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2253 Mtr-Chr1 32906083 32907562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2253 2 277 C3H Transcription Factor Family AT5G02750 50.347 3.39e-83 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2253 - - mtr:MTR_1g067260 354.369