Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2240 ATGCCTCCGAAGCAATCAAAAGCTGATGTAGCCAAGAAGCAGAAGGTTGTTGAAGACAAAACTTTTGGTCTCAAAAACAAAAACAAAAGCAAAGCTGTTCAGAAATATGTTCAGAATCTCAAATCTTCCGTTCAACCCAGAACCGATCCCAAACAAGATGCAAAGAAAAAGAAGGAGGAAGAGAAGGCAAAGGAGAAGGAGCTGAATGATCTGTTCAAAATTGCTGTTAGTCAGCCTAAAGTCCCACCTGGTGTTGATCCCAAGTCCGTATTATGTGAGTTTTTTAAAGTTGGTCAGTGTGCTAAGGGATTCAAATGCAAATTCTCTCATGATTTGAATGTTCAGAGGAAAGGGGAGAAGATTGACATATACAGTGATAAGCGTGACGATGATACGATGGAGGAGTGGGATCAAGAGACATTGGAGAAAGTGGTGGAGTCGAAGAAAAATGAGTATAATCAGAACAAACCAACAGATATTGTATGCAAACACTTTTTGGATGCGGTAGAGAGGAAGCAATATGGTTGGTTTTGGTCATGTCCAAATGGTGGCAAAAATTGTATCTATAGACATGCACTTCCACCTGGATATGTTCTAAAATCCCAAATGAAGGCTTTGTTAGAGGAAGAATCTGATAAAATGCCAATTGAGGAGGAGATTGAAAAGCAGCGTTCCCAAGTGAAAACTACAACTCCTATAACTACTGAGTTGTTCTATCAATGGAAGAAGAAAAAAATGGATGAGAGAGATGCCAGTTTGGCTGCCCAACAGGCAGAGAGGGCAAAGAATGACCGTATGAGTGGTCGTGAGCTGTTTTTGTCCAATGCTAGCTTGTTTGTGGATGATGCTGAAGCATACGACAACTACCAAAGAGAACCAGAACCTGATGAAACTGAACAGAATGGGACTGGGAGTGCTGCTAATAATGGTCCCAGCACCTCAGCAACAGGTGGCGCAGACGATGAACTTCCCGATGACATTGACGACGACGACGATGATGAATTGGACTTGGACGAGTTGAATGAACTGGAAGCAAGTTTAGCCAAGACATCAATCCAAATTAAGGAGCCAGGAGCTGAAGCTTAA 1086 0.4208 MPPKQSKADVAKKQKVVEDKTFGLKNKNKSKAVQKYVQNLKSSVQPRTDPKQDAKKKKEEEKAKEKELNDLFKIAVSQPKVPPGVDPKSVLCEFFKVGQCAKGFKCKFSHDLNVQRKGEKIDIYSDKRDDDTMEEWDQETLEKVVESKKNEYNQNKPTDIVCKHFLDAVERKQYGWFWSCPNGGKNCIYRHALPPGYVLKSQMKALLEEESDKMPIEEEIEKQRSQVKTTTPITTELFYQWKKKKMDERDASLAAQQAERAKNDRMSGRELFLSNASLFVDDAEAYDNYQREPEPDETEQNGTGSAANNGPSTSATGGADDELPDDIDDDDDDELDLDELNELEASLAKTSIQIKEPGAEA* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2240 361 MobiDBLite consensus disorder prediction 48 64 - -
Mtr1g2240 361 MobiDBLite consensus disorder prediction 299 316 - -
Mtr1g2240 361 MobiDBLite consensus disorder prediction 321 337 - -
Mtr1g2240 361 SUPERFAMILY CCCH zinc finger 86 111 IPR036855 GO:0046872
Mtr1g2240 361 Gene3D - 203 277 - -
Mtr1g2240 361 ProSiteProfiles Zinc finger C3H1-type profile. 86 113 IPR000571 GO:0046872
Mtr1g2240 361 MobiDBLite consensus disorder prediction 38 64 - -
Mtr1g2240 361 ProSiteProfiles Zinc finger C3H1-type profile. 156 194 IPR000571 GO:0046872
Mtr1g2240 361 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 360 - -
Mtr1g2240 361 Gene3D - 85 202 - -
Mtr1g2240 361 SMART c3hfinal6 86 112 IPR000571 GO:0046872
Mtr1g2240 361 SMART c3hfinal6 156 193 IPR000571 GO:0046872
Mtr1g2240 361 Coils Coil 51 71 - -
Mtr1g2240 361 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 21 1 360 - -
Mtr1g2240 361 Pfam DRG Family Regulatory Proteins, Tma46 214 294 IPR032378 -
Mtr1g2240 361 MobiDBLite consensus disorder prediction 290 337 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr1g2240 DFRP_C 1.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2240 - - gmx:100783113 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2240 1 32761171 32765915 Mtr1g2240 1 32761171 32765915 ECH