Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2239 ATGTTCTCTGTGGCAGAAGAAAACCAAACCATGAACTCTAATTCTAACTCAATGGCAGCACCAACAACAACTACAACAACTAGTGGTGGAGATGCTTCTGGTAAGAAGGTTAGAAAACCATACACAATTACTAAGTCAAGAGAAAGCTGGTCTGATGAAGAACATGACAAGTTTCTTGAAGCTCTTCAATTGTTTGATAGAGATTGGAAGAAGATTGAAGATTTTGTAGGCTCTAAAACAGTTATTCAGATTCGAAGTCATGCCCAAAAATACTTCTTAAAGGTTCAAAAGAATGGAACACTAGCTCATGTCCCTCCTCCTCGTCCAAAGCGCAAAGCTATTCATCCTTATCCACAAAAAGCAACAAAAAATGTTTTGGTGCCACTACCAGCATCCATTGCTTTTGGCTCTTCCGTAAATACCCTTCTACCTGCAGGGTATGTCACGTGGGATGAAACGTCCATGCTGATGAATACTTGTCAGGATGAACTCAACAGTCTTCACGGAAATGAAGCTGACATTGGATCAAAGGGGATCAGCAACAGCGGTCTTAGTGGTGTTGAAGATACTAATACAAGGCTACCTACTTCTCAAATACCAACGCAAGGGACACAAAATCCCGTGATTCATGGTTTGCCGGACTTTGCTGAAGTTTACGGTTTCATTGGAAGTGTTTTTGATCCGGATACAAACGGCCATGTGCAGAAGCTGAAGGAAATGGACCCTATAAATTTTGAAACTGTTTTGTTGTTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTAATTTTGATCCCATTAAGGCGATGTCAACATATGATGAGAATAACGATGCAGTAGGAGTTACTGATGATAAGAAGCAGACAAATGATGAATCATGTCAAACCACTTGA 894 0.4049 MFSVAEENQTMNSNSNSMAAPTTTTTTSGGDASGKKVRKPYTITKSRESWSDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTLAHVPPPRPKRKAIHPYPQKATKNVLVPLPASIAFGSSVNTLLPAGYVTWDETSMLMNTCQDELNSLHGNEADIGSKGISNSGLSGVEDTNTRLPTSQIPTQGTQNPVIHGLPDFAEVYGFIGSVFDPDTNGHVQKLKEMDPINFETVLLLMRNLTVNLSSPNFDPIKAMSTYDENNDAVGVTDDKKQTNDESCQTT* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2239 297 MobiDBLite consensus disorder prediction 1 40 - -
Mtr1g2239 297 SUPERFAMILY Homeodomain-like 41 97 IPR009057 -
Mtr1g2239 297 CDD SANT 49 92 IPR001005 -
Mtr1g2239 297 Pfam Myb-like DNA-binding domain 47 92 IPR001005 -
Mtr1g2239 297 PANTHER PROTEIN REVEILLE 8 14 292 - -
Mtr1g2239 297 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 45 94 IPR006447 GO:0003677
Mtr1g2239 297 Gene3D - 50 97 - -
Mtr1g2239 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 96 IPR017930 -
Mtr1g2239 297 PANTHER SWI/SNF COMPLEX-RELATED 14 292 - -
Mtr1g2239 297 MobiDBLite consensus disorder prediction 1 32 - -
Mtr1g2239 297 ProSiteProfiles Myb-like domain profile. 42 92 IPR001005 -
Mtr1g2239 297 ProSiteProfiles SANT domain profile. 45 98 IPR017884 -
Mtr1g2239 297 MobiDBLite consensus disorder prediction 178 207 - -
Mtr1g2239 297 SMART sant 46 94 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2239 Mtr-Chr1 32743913 32749965 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr1g2239 Myb_DNA-binding 4.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2239 - - gmx:100797466 427.172