Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2220 ATGGAACAATCGACAACGTCTTGCAGTTGGTCTATAATCAGTTTCAGCAATTTTTCCGTGGAGCAATTTTCTCCCCCACCGTGCACTGTCATTGACAACCACCGTGCCGGAACTGTAGCTTCATCGACGTGTTTTACTTCTTCACATTATCTACAATGGGTAAGAAAAAGTCAGAAGATTCAAAAACATAGGGCTGATGTTAAGCCACTTGAGGTGTCTATTGCTGCAAAAGAGTTGAAAAAGCGTGAAAAGAAAGATATTTTAGCTGCCCATTTGGCTGAACAGGCAAAAAAAGAAGCTCTTAAAGATGATCGTGATGCTTTCACTGTTGTCATTGGAAGTCGGGCTTCGGTTCTTGATGGAGACGATGGTGCTAATGCTAATGTCAAAGATATAATGATAGATAAATTTTCTGTGTCTGCTCGTGGCAAAGAACTTCTGAAGAATGCGTCAGTGAAGATATCTCATGGAAAACGGTATGGTTTGCTTGGGCCGAATGGAATGGGCAAGTCAACACTTTTGAAGCTTCTTGCTTGGAGGAAGATACCAGTACCTAAGAATATTGACGTCCTTCTGGTTGAGCAGGAGGTAGTTGGTGATGATAAAACAGCGCTTGAAGCCACCGTTGTTTCAGCTAATGTTGAACTAGTTAAAGTTCGTCAAGAAGTTGCTGATCTACAAAATGCAGCTTCTTGTGAAGAAGGTGCAGATAAAGATGATACTAATGCGGAAGAGGATGCAGGAGAAAAGTTAGCTGAGCTGTATGAACAATTACAACTGATGGGGTCTGATGCTGCTGAATCTCAAGCATCAAAGATTTTAGCTGGTTTGGGTTTTACAAAGGATATGCAGGGCCGTCCTACAAAATCCTTTAGTGGGGGTTGGAGGATGAGAATTTCTTTAGCTCGAGCACTTTTTGTGCAGCCCACTCTATTATTGCTTGATGAACCCACTAATCATCTTGACCTGAGGGCTGTTCTCTGGTTAGAAGAATACTTGTGTCGCTGGAAGAAGACTTTGGTGGTTGTATCACACAATAGAGATTTTCTCAATACAGTATGCTCTGAGATTATTGACTTGCATGATTTCAAACTTCATTTCTATCGTGGAAATTACGATGCTTCTGAAAGAGGGATTGAACATCGTCGTAGCGAGGTGAATAAGAACTATGAGATTTATCAAAATCAATTGAAAGCAGCTAAAAGGACTGGAAACAAGGCTCAACAAGATAAGTTGAAGGATAGAGCTAAGTTTGCAGCTGCTAAAGAAGCATCGAAAAGCAAAAGTAAGGGAAAGGTTGATGAGGATGAGGCCCAAGTAGAGGTACCACACAAATGGAGAGACTACAGCGTGAAGTTTCACTTTCCTGAACCTACTGAGTTCACACCTCCACTTCTGCAGCTTATTGAAGTGAGCTTTAGCTACCCAAACCGGAAGGATTTCAGACTCTCAGATGTTGATGTTGGCATTGATATGGGGACTCATGTTGCCATCGTTGGGCCTAACGGTGCTGGAAAATCTACACTTCTAAATCTTCTAGCTGGTGATTTGGTTCCAAGTGAAGGTGAAGTTCGAAGAAGTCAGAAATTGAGGATAGGGAGATATTCCCAACACTTTGTGGACCTACTAACAATGGATGAAACACCTGTTCAGTACCTTCTTCGTCTGCATCCAGACCAGGAGGGACTTAGTAAGCAAGAGGCTGCCCGTGCAAAACTTGGTAAATTTGGGCTACCTAGTCATAACCATCTTTCCCCCATTGTCAAACTATCAGGAGGGCAGAAAGCTCGGGTGGTATTCACATTGATATCCATGTCAAAACCTCACATTTTATTGTTAGATGAACCCACAAATCATCTGGATATGGAAAGTATTAAAGCATTGGCTGATGCACTGGATAAATTCACCGGTGGAGTTGTTCTTGTTAGTCATGATTCTAGATTGATTTCACGTGTGTGTAAGGATGAAGAACGGAGTCAAATATGGGTTGTTGAAGATGGTACTGTAAGAAATTTCCCTGGAACATTTGAGGATTACAAAGAAGATTTGCTGAAAGAAATTAAAGCTGAAGTTGATGACTGA 2082 0.4159 MEQSTTSCSWSIISFSNFSVEQFSPPPCTVIDNHRAGTVASSTCFTSSHYLQWVRKSQKIQKHRADVKPLEVSIAAKELKKREKKDILAAHLAEQAKKEALKDDRDAFTVVIGSRASVLDGDDGANANVKDIMIDKFSVSARGKELLKNASVKISHGKRYGLLGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEATVVSANVELVKVRQEVADLQNAASCEEGADKDDTNAEEDAGEKLAELYEQLQLMGSDAAESQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHNRDFLNTVCSEIIDLHDFKLHFYRGNYDASERGIEHRRSEVNKNYEIYQNQLKAAKRTGNKAQQDKLKDRAKFAAAKEASKSKSKGKVDEDEAQVEVPHKWRDYSVKFHFPEPTEFTPPLLQLIEVSFSYPNRKDFRLSDVDVGIDMGTHVAIVGPNGAGKSTLLNLLAGDLVPSEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAARAKLGKFGLPSHNHLSPIVKLSGGQKARVVFTLISMSKPHILLLDEPTNHLDMESIKALADALDKFTGGVVLVSHDSRLISRVCKDEERSQIWVVEDGTVRNFPGTFEDYKEDLLKEIKAEVDD* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2220 693 CDD ABCF_EF-3 132 364 - -
Mtr1g2220 693 CDD ABCF_EF-3 466 668 - -
Mtr1g2220 693 ProSitePatterns ABC transporters family signature. 291 305 IPR017871 GO:0005524
Mtr1g2220 693 SMART AAA_5 156 373 IPR003593 -
Mtr1g2220 693 SMART AAA_5 492 668 IPR003593 -
Mtr1g2220 693 Pfam ABC transporter 147 319 IPR003439 GO:0005524
Mtr1g2220 693 Pfam ABC transporter 483 618 IPR003439 GO:0005524
Mtr1g2220 693 Gene3D - 428 692 IPR027417 -
Mtr1g2220 693 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 466 691 IPR003439 GO:0005524
Mtr1g2220 693 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 132 387 IPR003439 GO:0005524
Mtr1g2220 693 Gene3D - 132 416 IPR027417 -
Mtr1g2220 693 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 445 678 IPR027417 -
Mtr1g2220 693 PANTHER BNAA06G39310D PROTEIN 55 693 - -
Mtr1g2220 693 Coils Coil 209 229 - -
Mtr1g2220 693 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 132 377 IPR027417 -
Mtr1g2220 693 Coils Coil 383 410 - -
Mtr1g2220 693 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 55 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2220 Mtr-Chr1 32544305 32553020 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2220 466 669 Calmodulin-binding Proteins AT2G36910 29.148 9.09e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2220 K06184 - gmx:100806865 1052.74