Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2213 ATGCAGATTAAACTATATCCTTTTAGCCAGTCGTCGAGCCCGCCTAGCTCCTCTCAGTTAGTGTTTGAGCAGCAGAACAATTCAAGTAACAATCTTTTTGCTCATAAGCCATTTGGTAGTCCAACTCCATTTGGATCGAAAACGGATATTTCCAGGGATACTTCCACAGGTGTATTTGGCACAGCTCAAACACCGTCTCTCTTCTCTTTCAATACTACTGTTGGCACTTCATCTTCACCAGCTTTCGGTGGTAGTTCATTGCCTGCATTTGGCGCATCTTCAACTCCTGCTTTTGGTAGTTCAACGCCTGCATTCAGGGCATCTTCAACTCCGGTTTTGGGTAATTTATCATCATCATTAGGTGGATCATCACTCTTTGGTCAGGAGCCTGCTTTTGTAGGTTTTGGCTCTACTCCTACTCAAACAAGTCCATGTAGAAGTGCCATCCAACCATCACGACCAGCATTTGGAAGTAACGCTGGTCATGCTTCACTGTATGGTTCTTTGAGTATACATGATCAACATAGGGACATGCGGATGGACATAAGCGGCATGAGCTACGAGGAACTACTTGCACTTGGAGAGAGGATCGGCTATGTGAATACAGGATTATCTGAGAGTTTGATTTCTAAGTATTTGACAAAAACACTGTACTGTTCAGCTGAGCAAAGTCAAGAAGGAACTTGTGCAATTTGTCTGGAAGAATACAAGAACATGGACAGTATTGGGACATTGGAAACTTGTGGACATGACTACCATGTGAGCTGCATTAGAAAGTGGTTATCTATGAAGAACTTGTGTCCCATATGCAAAGTTTCTGCTTTGCCTGATGAGTGA 837 0.4325 MQIKLYPFSQSSSPPSSSQLVFEQQNNSSNNLFAHKPFGSPTPFGSKTDISRDTSTGVFGTAQTPSLFSFNTTVGTSSSPAFGGSSLPAFGASSTPAFGSSTPAFRASSTPVLGNLSSSLGGSSLFGQEPAFVGFGSTPTQTSPCRSAIQPSRPAFGSNAGHASLYGSLSIHDQHRDMRMDISGMSYEELLALGERIGYVNTGLSESLISKYLTKTLYCSAEQSQEGTCAICLEEYKNMDSIGTLETCGHDYHVSCIRKWLSMKNLCPICKVSALPDE* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2213 278 MobiDBLite consensus disorder prediction 1 24 - -
Mtr1g2213 278 ProSiteProfiles Zinc finger RING-type profile. 229 271 IPR001841 -
Mtr1g2213 278 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 121 276 - -
Mtr1g2213 278 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 124 - -
Mtr1g2213 278 SMART ring_2 229 270 IPR001841 -
Mtr1g2213 278 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 121 276 IPR045191 GO:0061630
Mtr1g2213 278 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 8 124 IPR045191 GO:0061630
Mtr1g2213 278 Pfam Ring finger domain 228 271 IPR001841 -
Mtr1g2213 278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 275 IPR013083 -
Mtr1g2213 278 SUPERFAMILY RING/U-box 213 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2213 Mtr-Chr1 32462295 32467161 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2213 166 277 C3H Transcription Factor Family AT2G37150 63.717 4.91e-38 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2213 - - gmx:100803627 202.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2213 1 32462295 32467161 Mtr1g2213 1 32462295 32467161 ECH