Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2212 ATGGGGCATAGACATTTTTATAGTGCATCTCCAATGTTTGAGAGTGATCCTGACCAGAACTGGAATCATATGCAAACTCAACAACATTATATGCACCTTGGTAGGAGTGGCACTTCAGATAGTGGTTCTTTTTGTTACCCTTTGGAAAATATGTCCACAGATAGCATTTCTTTTCCATCTCATTGGAACTCTGCAGCAAGGTCAAATGGATATGCATCATCAAGTTTAAACACTGAAGCACTCCGTCATCAATCATATGCATCAGGAACTTCTCACAATCATTTTCTGCATTCATCAAGTGCTGGAACTTCCTTCGAAGTGTCTGGAAATTATGTACCCCAACCTTCTAATTCTAATTATCAGAGACAATCATTTCCTGATGTAGATGGTGGTTTTACTCATCGTACACTAACAAGTGGATGGGGGTCTCACAAGAGGAAGGGCCCTGGAGTTCCTTCAATCTATGAGAGTGGCAGTACAAGCAGACATGTCAATGCAGGAAGTGCATCTGATCTTCCTTCATCTTCAGAATCACGTCCAGAGAAGCCATACATGGATTCTCAATATATGCCTTGGGATCATGTTTCTATGACCCCTTCATTTGGAGGTAGTGGCCTTCCAATAAGGGGTGAGGGTTCTTCAAGGAATGTGAGGCGTCGTTTTGGATTTGATTTGGAATCAAACCCGCAAAGAACCCAATTGTGGAGTAATTATCCTCACAACTCATACCCTACTGGCATGCCAATTAACCATTCTGGACCAGTTGATCTTTCAAGTCAAACTTCTAGCAATTGGAAAAGGGATTGGTGCCAAACGAGTATAAATCCTGCTCATGGAAGGGTATTACCATCAGATTCAAGTGGTTTTTTTAGCCACGAGACAAGTCATTTTCTTGTTGGAAGGCATTCTAGTAATGCTCCTGTAGATGTGGACCATAATGATTTTGGTACAAGAAGAAACCCCCCTGCTCCTCAAATTTTTCAGAATAATCCGACTCAAACTACGTGGGGAGTTCATGGTAACTATTCTCAAAGACCCATCACAACTTTTAGCGCTTCTTCAAGCTTTTGCCTGGGACATGCGGCACCTTCAGAAGATGGATTGCATATACTGGCTGAAAGTGGCTCTGCTGTAGATCCATGGCCGTTAAGCTCTGTTGGTTGGCAGAGTAGTGATAGGAATGGGACAAGGATGTATAGTGATAGATATTGCTCACTGTCTGACGAGGCTGGTCGCAGTGATCAATTTTTTCGTGAGTACGGTTCTCCTAATATACATGATCAGCATAGGGACATGAGGATGGACATAGACAACATGAGCTATGAGGAACTACTTGCACTTGGAGAAAGGATCGGCAATGTCGGCACAGGATTATCTGAGGGTTTGATTTCTAAGTATTTGACAAAAACATTGTATTGTTCAGCTGAGCAAAGTCAAGAAGGAACTTGTGCAATTTGTCTGGTAGAATACAAGAACATGGACGATGTTGGGACAATGAAAACTTGTGGACACAACTACCATGTGAGCTGCATTAGAAAGTGGTTATCTATGAAGAACATGTGTCCCATATGCAAAGCTTCTGCTTTGACTGATGAGTGA 1599 0.4215 MGHRHFYSASPMFESDPDQNWNHMQTQQHYMHLGRSGTSDSGSFCYPLENMSTDSISFPSHWNSAARSNGYASSSLNTEALRHQSYASGTSHNHFLHSSSAGTSFEVSGNYVPQPSNSNYQRQSFPDVDGGFTHRTLTSGWGSHKRKGPGVPSIYESGSTSRHVNAGSASDLPSSSESRPEKPYMDSQYMPWDHVSMTPSFGGSGLPIRGEGSSRNVRRRFGFDLESNPQRTQLWSNYPHNSYPTGMPINHSGPVDLSSQTSSNWKRDWCQTSINPAHGRVLPSDSSGFFSHETSHFLVGRHSSNAPVDVDHNDFGTRRNPPAPQIFQNNPTQTTWGVHGNYSQRPITTFSASSSFCLGHAAPSEDGLHILAESGSAVDPWPLSSVGWQSSDRNGTRMYSDRYCSLSDEAGRSDQFFREYGSPNIHDQHRDMRMDIDNMSYEELLALGERIGNVGTGLSEGLISKYLTKTLYCSAEQSQEGTCAICLVEYKNMDDVGTMKTCGHNYHVSCIRKWLSMKNMCPICKASALTDE* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2212 532 MobiDBLite consensus disorder prediction 154 182 - -
Mtr1g2212 532 Pfam Ring finger domain 482 525 IPR001841 -
Mtr1g2212 532 CDD RING-H2_PA-TM-RING 482 525 - -
Mtr1g2212 532 ProSiteProfiles Zinc finger RING-type profile. 483 525 IPR001841 -
Mtr1g2212 532 SUPERFAMILY RING/U-box 468 528 - -
Mtr1g2212 532 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 455 529 IPR013083 -
Mtr1g2212 532 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 530 IPR045191 GO:0061630
Mtr1g2212 532 SMART ring_2 483 524 IPR001841 -
Mtr1g2212 532 MobiDBLite consensus disorder prediction 136 186 - -
Mtr1g2212 532 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2212 Mtr-Chr1 32444132 32453219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2212 1 531 C3H Transcription Factor Family AT2G37150 37.432 4.95e-79 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2212 - - gmx:547939 705.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2212 1 32444132 32453219 Mtr1g2212 1 32444132 32453219 ECH