Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2210 ATGAGCGTAATCGATCTTCTTACACGAGTCGATTCAATCTGCAAAAAATACGATAAATACGACCTCGACAAGCAGAACAATGCCAATGTCTCCGGCGACGATGCTTTTGTCCGTCTCTACGCCTCCGTCGACTCCGACATCGAAGCCCTTCTTCAAAAAGCAGAAAAAGCTTCTAATGAAAGAGGGAAGGCATCTGCTGTAGCGATCAATGCGGAGATTCGTCGTACTAAGGCCAGGTTGTTGGAGGAAGTTCCTAAGTTGCAGAGGTTGGCTCTCAAAAAGGTAAAAGGCCTTGAGTCGCAAGAATTTGCTGCCCGTAATGATTTGGTTCTTGCACTGCCAGAAAGAATCCAAGCTATCCCAGATGGGACTCCTGTTGCGCCAAAACAAACTGGTGGCTGGGCATCTTCTGCCTCACGCCCTGAAATTAAATTTGATTCGGATGGCCGATTTGACGACGAGTACTTCCAATCTACTGAGCAATCAAATCAATTCAAGCAGGAATATGAAATGCGTAGAATCAAACAGGATCAAGGTTTGGATATGATTGCAGAAGGATTGGATACTTTGAAAGACATGGCGCATGACATGAATGAGGAACTGGATAGACAAGTTCCCCTAATGGATGAGATTGACGCTAAGGTGGACAAAGCATCCTCTGATCTTAAGAATACTAATGTTAGACTTAAGGACACAGTTAATCAGCTTCGATCCAGTCGAAACTTCTGTATTGATATTGTTTTGCTGATTATAATTCTGGGAATTGCTGCCTACTTATACAATGTGCTAAAGAAATGA 798 0.4336 MSVIDLLTRVDSICKKYDKYDLDKQNNANVSGDDAFVRLYASVDSDIEALLQKAEKASNERGKASAVAINAEIRRTKARLLEEVPKLQRLALKKVKGLESQEFAARNDLVLALPERIQAIPDGTPVAPKQTGGWASSASRPEIKFDSDGRFDDEYFQSTEQSNQFKQEYEMRRIKQDQGLDMIAEGLDTLKDMAHDMNEELDRQVPLMDEIDAKVDKASSDLKNTNVRLKDTVNQLRSSRNFCIDIVLLIIILGIAAYLYNVLKK* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2210 265 SMART tSNARE_6 162 232 IPR000727 -
Mtr1g2210 265 PANTHER SYNTAXIN-73 1 261 - -
Mtr1g2210 265 MobiDBLite consensus disorder prediction 121 141 - -
Mtr1g2210 265 Pfam SNARE domain 207 256 IPR000727 -
Mtr1g2210 265 CDD SNARE_Qc 175 230 - -
Mtr1g2210 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Mtr1g2210 265 PANTHER SYNTAXIN 1 261 IPR045242 -
Mtr1g2210 265 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Mtr1g2210 265 Coils Coil 40 60 - -
Mtr1g2210 265 SUPERFAMILY SNARE fusion complex 164 230 - -
Mtr1g2210 265 Gene3D - 170 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2210 Mtr-Chr1 32430009 32434576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2210 1 264 SNARE and Associated Proteins AT3G09740 75.940 7.03e-153 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2210 K08506 - gmx:100819272 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2210 1 32430009 32434576 Mtr1g2210 1 32430009 32434576 ECH