Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2209 ATGCAAATGATTCCTGGTGACCCTTTTTCACTATCCACTTCACTTGGAGGGTTTACTACTCAAGAGCAAAACACAAACCCTAACCCTAAACCTAATGCTCCTTCTGTCCCCAAGAAGAAGAGAAATCTTCCAGGAACACCAGATCCAGATGCCGAGGTCATTGCTCTCTCACCGAAGACACTCATGGCAACAAACAGATTCATCTGTGAAATATGCAACAAAGGGTTCCAAAGAGATCAAAACCTTCAACTACATAGAAGAGGACACAACCTTCCATGGAAGCTTAGACAGAGATCCAACAAAGATGTTATCAAGAAGAAAGTTTACATCTGTCCAGAGAAGACCTGTGTCCACCATGACCCTTCAAGAGCACTTGGTGACCTCACAGGTATAAAAAAGCACTTTAGTAGAAAGCACGGTGAGAAGAAGTGGAAATGTGAAAAATGTTCCAAAAAATATGCAGTCCAATCTGATTGGAAAGCTCATACAAAAACATGTGGTACAAGAGAATACAAATGTGACTGTGGCACCCTCTTCTCAAGAAAGGATAGTTTCATTACACATAGAGCCTTTTGTGATGCATTGGCAGAAGAGAGTGCAAGAGTAACTTCAGTTACAACAACAAATCTAAATTTTAAGAATGAAGAAGGTAGTGCTATGATGAATCCACATTCACATTCACAACATGGTTTATCACATGGAATACTTCAAAATATAGGTGGAATTCCACATCCACAATTTGGCTCACATGGATTTCATCATGTAGATTTCAATGGAATTGGAAACAAAAACACTATGATTATGGAGCAACAAAGGCCAAGTTTATCACTTTGGTTAAACCAAGGGAATCATGAAATGGGACAAAGTTCTAATTCCCTTTTTGGTTCTTCTGGTTTATCTGAGATAGTTCAAATGGGAAATGCTGCTACTAATAATAATAATAATAATGCCTTGATTTGTTCTTCTTCATCATCAATGTTTGGTATACCTGCTTCAAATTCAACATCTGCTGCAAATCTTTCTCTATCAAAACCTGCTTCTTCCGGTTCTGTTACTGTTTCTGCTACACCAATGTCAGCTACTGCTCTTCTGCAAAAAGCAGCTCAAATGGGTTCAACTAGAAGCAATACTAGTAATGATAATAACAACCCTTCCATTTTTAGTTCTAGTTTTGGTGTAATGACATCACCTTCTTCTTCTACTAGTTCAGCTATGTTGGGAAATAGTAGTGCAGGTGCAGCTGCTAATGCTAATTATAGCTCAAATAGTAGTTTTGATCAATTTTTTATGCATGGACCACAAAGTGATCAACAAGGGAAATTGAATATTATGCACCATGGTGGTTCTGGTTCTGGTTCAAACTCTATGGATCAAGTACAACATAGTAATTTGACAAGAGATTTTCTTGGTGTGAGTGGTGGAGGAAGAACTGGTCCACCTCAGTTTCTACCTCAAGAGATAGCAAAATTTGCTTCTTCCATTCAATTCACAGGTAATCAGTGA 1503 0.3826 MQMIPGDPFSLSTSLGGFTTQEQNTNPNPKPNAPSVPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKDVIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARVTSVTTTNLNFKNEEGSAMMNPHSHSQHGLSHGILQNIGGIPHPQFGSHGFHHVDFNGIGNKNTMIMEQQRPSLSLWLNQGNHEMGQSSNSLFGSSGLSEIVQMGNAATNNNNNNALICSSSSSMFGIPASNSTSAANLSLSKPASSGSVTVSATPMSATALLQKAAQMGSTRSNTSNDNNNPSIFSSSFGVMTSPSSSTSSAMLGNSSAGAAANANYSSNSSFDQFFMHGPQSDQQGKLNIMHHGGSGSGSNSMDQVQHSNLTRDFLGVSGGGRTGPPQFLPQEIAKFASSIQFTGNQ* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2209 500 MobiDBLite consensus disorder prediction 1 51 - -
Mtr1g2209 500 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Mtr1g2209 500 Gene3D Classic Zinc Finger 45 120 - -
Mtr1g2209 500 SMART c2h2final6 67 89 IPR013087 -
Mtr1g2209 500 SMART c2h2final6 144 164 IPR013087 -
Mtr1g2209 500 SMART c2h2final6 109 139 IPR013087 -
Mtr1g2209 500 Gene3D Classic Zinc Finger 122 202 - -
Mtr1g2209 500 MobiDBLite consensus disorder prediction 365 384 - -
Mtr1g2209 500 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Mtr1g2209 500 Pfam Zinc-finger double-stranded RNA-binding 67 89 IPR022755 -
Mtr1g2209 500 PANTHER ZINC FINGER PROTEIN JACKDAW 7 493 IPR033243 GO:0003700
Mtr1g2209 500 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 493 - -
Mtr1g2209 500 SUPERFAMILY beta-beta-alpha zinc fingers 66 164 IPR036236 -
Mtr1g2209 500 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2209 Mtr-Chr1 32416456 32419236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2209 1 491 IDZ Gene Family AT5G03150 48.435 2.66e-143 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr1g2209 zf-C2H2_jaz 7.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2209 K25870 - gmx:100801182 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2209 1 32416456 32419236 Mtr1g2209 1 32416456 32419236 ECH