Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2208 ATGGCAACTGAAGCTTCCATGAATAATAATAACCAAGGAGCTAGCACCATTGAAAATAGAGATGATATCTCAATTCAAAAGGGTGTGGCATCATCTGAAATAACTGAGGAACTCCCAAGTGGACAACAAAGAACAAGGCAAAACCTTGGTATAGAGACACAAATAAAAACACATGAAGAAACAAAAGAAGATTTTTTGAGAATAAATATACCATTAACTCCATCACCAAGAAGAGTGATATTTTCCCCTTGTACAAGTCCTGGTTATTTCGTTGAAACCAATGATTCCCCAAGTCCCTCTAGTTCTAAAAATAGATCCACTCTTAAAAAAACTTTTATTCCTAAACTCAGTTTTAAATTTAAGAACACAACTTCTGAGATTGAAAAAGCTGCTTTCCTTGCACTTGAAGGCTCGTCCACATTGCCGTCGAAAAAGCCTTTTCTTTCGAGGACATTGTCTCGAATGAAATCGAGAGGGAGGAAAACATCTTCATTGCCTGTATCGCCGGTTCCTCGTTCAAATCCAGTGTATGTACATGGAGGGAAAGGTTTTCCAGCAATGGGTAGTGAGAAAGAACTGCAATTACCAATTCATCGTTCCCGGTCTGTTCCTTCCTTCACCGAAGACGATACTCATGTAGGTGGCATGTTTCGTATATTTCGAACCATACCACAGTTTAATGAGAAAATTACCACCACAGTATCTGTGGCATCTCCAAAGGGTGAAAATGTTGAAACTGAGGATGGAGGGGAAGATATTCCTGAAGAAGAAGCTGTTTGTAGAATTTGCATGGCTGAATTGGGAGAAGGTGCTGATAATTTTAAATTGGAGTGCAGCTGCAAAGGTGAGCTTTCACTGGCACACAAAGAATGTGCAGTTAAATGGTTTGGCATTAAAGGTAATAGGACATGTGATGTGTGCAAGCAAGAAGTTCAGAACTTACCTGTCACTCTTTTAAGACTTCACCAAGCTAACTTGCAATTGAGCAGAGGTCACTTAGATGAAACTTCTCAATACAGGGTTTGGCAGGATGCCCCCATTCTTGTCATTGTCAACATGCTGGCTTACTTTTGTTTTCTTGAGCAGCTTCTTGTTTCAGATATGGGATCTAGTGCTATTGCCATGTCCCTTCCCTTTTCTTGTATACTTGGCCTTCTTGCAAGCATGACAGCTACAACCATGGTGAGGAGAAATCATGTTTGGATTTATGGAACCATGCAGTTTTGTTTGGTGGTTCTTTGTGGACATCTTTTCTTCAAATTGACTAAAATGGGAGCTGTTTTGGCAATCCTACTAGCTACATTTGCTGGGTTTGGAGTTGTAATGTGTGGAACATGTATTCTTATAGAGATCTTGAAATGGAGGAGAAGATGGCTTGCTCAGTTGAATCAACAGAATGTCGGTTCCGAGGATGCGGTTCTTCCCGATCAATCATCTGCAGCCACTCATCAAGTTCAAATTGATTCTCAACATACTGAGAGTAATGTGGGCAACTCTCCTAGGCAAATGAGCTGA 1515 0.4046 MATEASMNNNNQGASTIENRDDISIQKGVASSEITEELPSGQQRTRQNLGIETQIKTHEETKEDFLRINIPLTPSPRRVIFSPCTSPGYFVETNDSPSPSSSKNRSTLKKTFIPKLSFKFKNTTSEIEKAAFLALEGSSTLPSKKPFLSRTLSRMKSRGRKTSSLPVSPVPRSNPVYVHGGKGFPAMGSEKELQLPIHRSRSVPSFTEDDTHVGGMFRIFRTIPQFNEKITTTVSVASPKGENVETEDGGEDIPEEEAVCRICMAELGEGADNFKLECSCKGELSLAHKECAVKWFGIKGNRTCDVCKQEVQNLPVTLLRLHQANLQLSRGHLDETSQYRVWQDAPILVIVNMLAYFCFLEQLLVSDMGSSAIAMSLPFSCILGLLASMTATTMVRRNHVWIYGTMQFCLVVLCGHLFFKLTKMGAVLAILLATFAGFGVVMCGTCILIEILKWRRRWLAQLNQQNVGSEDAVLPDQSSAATHQVQIDSQHTESNVGNSPRQMS* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2208 504 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 9 499 - -
Mtr1g2208 504 MobiDBLite consensus disorder prediction 476 504 - -
Mtr1g2208 504 CDD RING_CH-C4HC3_MARCH 260 308 - -
Mtr1g2208 504 ProSiteProfiles Zinc finger RING-CH-type profile. 252 314 IPR011016 GO:0008270
Mtr1g2208 504 PANTHER OS02G0165000 PROTEIN 9 499 - -
Mtr1g2208 504 MobiDBLite consensus disorder prediction 1 49 - -
Mtr1g2208 504 SUPERFAMILY RING/U-box 256 311 - -
Mtr1g2208 504 Pfam RING-variant domain 260 307 IPR011016 GO:0008270
Mtr1g2208 504 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 315 IPR013083 -
Mtr1g2208 504 MobiDBLite consensus disorder prediction 152 176 - -
Mtr1g2208 504 SMART ringv_2 259 308 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2208 Mtr-Chr1 32402753 32407646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2208 254 314 C3H Transcription Factor Family AT2G37950 43.750 9.66e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2208 - - gmx:100787963 643.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2208 1 32402753 32407646 Mtr1g2208 1 32402753 32407646 ECH