Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2206 ATGGGTAATATAGGAAGTAGCGGTTCTAACAATCGTCGGAGACACGGTGGCGGTGGAAGTGGCCGGAGAGTTCATCCACCGGTAAATCCTCCGCCACCGGAGGCTGCTGGTAACCGATTTGTTTACCCTGCTGCTGCTCCTCCGTATCATAATTATCCTAATTACTATCCTCCGCCGCCGGGAACTGTTCCGATGCCGTTGCCGGCGCCTTATGATCACCATCACCGACAGGCGATGGACCCAATATCTTGGAGGTATCAGCAACAGGTGCCGGCGCCAGCGCCGTATGTGGAGCATCAGAAGGCGGTTACTATAAAGAATGATGTTAACATCAAGAAGGAGACACTGATGATTGAACCTGATGAGGAAAATCCTGGGTCTTTTCTTGTTACGTTTACTTTTGATGCTACTGTTTCTGGAAGCATCACCGTACTTTTCTTTGCAAAAGAAGGCGACGGTTGCGTCCTTACCTCAACGAAGGAAAATGTTCTTGCACCTGTTACTATAAATTTCCAACAAGGTCTTGGCCAGAAGTTTAGACAGCCAGCTGGAACTGGTATCAATTTTTCAATGTTTGAGGAATCCGAGTTATTGAAAGTGGCCGATATGGACATCTATCCTGTAGCAGTTAAAGCAGACGCATCTTCAAGCGACGTGGAGGGATCAAATGAAACACCGATATCTGGAAATAAAACAAACACAAACAACTCTCAGATAACTCAAGCAGTGTTTGAGAAGGAGAAAGGAGAATTCCGGTTAAAGGTAGCTAAGCAGATATTGTGGGTGAATGGAATGAGGTATGAGCTGCAGGAGATATATGGTATTGGAACTTCAGTTGAGAGTGATTTGGATGGGAATGACCCTGGAAAAGAGTGTGTTATCTGCTTGTCAGAACCTCGCAACACAACTGTCCTTCCCTGTCGCCACATGTGCATGTGTAGCGGATGTGCGAAGGTTTTAAGGTTTCAGACAAATAGATGTCCAATCTGCAGACAACCAGTTGAAAGGCTTTTGGAGATCAAAGTTGGGCCTGAGCCTGAGCCTGAGCAGTGA 1053 0.4653 MGNIGSSGSNNRRRHGGGGSGRRVHPPVNPPPPEAAGNRFVYPAAAPPYHNYPNYYPPPPGTVPMPLPAPYDHHHRQAMDPISWRYQQQVPAPAPYVEHQKAVTIKNDVNIKKETLMIEPDEENPGSFLVTFTFDATVSGSITVLFFAKEGDGCVLTSTKENVLAPVTINFQQGLGQKFRQPAGTGINFSMFEESELLKVADMDIYPVAVKADASSSDVEGSNETPISGNKTNTNNSQITQAVFEKEKGEFRLKVAKQILWVNGMRYELQEIYGIGTSVESDLDGNDPGKECVICLSEPRNTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPEPEPEQ* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2206 350 Pfam Zinc finger, C3HC4 type (RING finger) 290 336 - -
Mtr1g2206 350 SUPERFAMILY RING/U-box 291 337 - -
Mtr1g2206 350 PANTHER MAHOGUNIN 1 347 IPR045194 GO:0061630
Mtr1g2206 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 341 IPR013083 -
Mtr1g2206 350 ProSiteProfiles Zinc finger RING-type profile. 292 331 IPR001841 -
Mtr1g2206 350 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 291 331 IPR045195 -
Mtr1g2206 350 SMART ring_2 292 330 IPR001841 -
Mtr1g2206 350 MobiDBLite consensus disorder prediction 1 39 - -
Mtr1g2206 350 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2206 Mtr-Chr1 32386008 32389898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2206 93 311 C3H Transcription Factor Family AT3G09770 64.732 1.62e-98 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2206 - - gmx:100789032 502.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2206 1 32386008 32389898 Mtr1g2206 1 32386008 32389898 ECH