Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2201 ATGCCTCCAAAGCTCGACCCATCACAGATCGTCGAAGTTTACGTCCGTGTCACCGGAGGCGAAGTCGGCGCCGCCAGTTCCCTCGCTCCCAAGATCGGACCACTCGGTCTCTCTCCAAAAAAGATCGGAGAAGACATCGCCAAAGAAACCGCAAAAGACTGGAAGGGTCTCCGTGTCACAGTCAAGCTCACCGTCCAGAATCGTCAAGCGAAGGTTGCGGTTGTTCCCTCCGCGGCGGCGCTGGTGATTAAGGCATTGAAGGAACCAGAGAGAGATAGGAAGAAGACTAAGAATATTAAGCATAATGGGAATATTTCGCTTGATGATGTTATTGAGATTGCGAAGATTATGAAGCCGAGATCTATGGCGAAGGAGCTTGCGGGTACTGTGAAGGAGATTCTTGGGACCTGTGTTTCTGTTGGGTGTACTGTTGATGGGAAAGATCCAAAGGATTTGCAACAAGAGATTGATGATGGTGATGTTGAGATTCCTCTAGAATAA 501 0.491 MPPKLDPSQIVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIAKIMKPRSMAKELAGTVKEILGTCVSVGCTVDGKDPKDLQQEIDDGDVEIPLE* 167
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2201 166 ProSitePatterns Ribosomal protein L11 signature. 131 146 IPR020785 GO:0003735|GO:0005840|GO:0006412
Mtr1g2201 166 SMART rl11c 13 145 IPR000911 GO:0003735|GO:0005840|GO:0006412
Mtr1g2201 166 Gene3D - 1 81 IPR036796 -
Mtr1g2201 166 Pfam Ribosomal protein L11, N-terminal domain 13 69 IPR020784 -
Mtr1g2201 166 MobiDBLite consensus disorder prediction 146 166 - -
Mtr1g2201 166 SUPERFAMILY Ribosomal protein L11, C-terminal domain 76 149 IPR036769 -
Mtr1g2201 166 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 87 IPR036796 -
Mtr1g2201 166 Pfam Ribosomal protein L11, RNA binding domain 75 144 IPR020783 GO:0003735|GO:0005840|GO:0006412
Mtr1g2201 166 PANTHER 60S RIBOSOMAL PROTEIN L12 1 165 IPR000911 GO:0003735|GO:0005840|GO:0006412
Mtr1g2201 166 PANTHER 60S RIBOSOMAL PROTEIN L12-3 1 165 - -
Mtr1g2201 166 Gene3D - 82 164 IPR036769 -
Mtr1g2201 166 CDD Ribosomal_L11 13 144 IPR000911 GO:0003735|GO:0005840|GO:0006412
Mtr1g2201 166 Hamap 50S ribosomal protein L11 [rplK]. 9 146 IPR000911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mtr1g2201 Mtr-Chr1 32293980 32294758 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2201 1 166 Cytoplasmic Ribosomal Protein Gene Family AT5G60670 90.964 2.30e-108 304
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2201 K02870 - qsu:112036539 316.235
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2201 1 32293980 32294758 Mtr1g2201 1 32293980 32294758 ECH
Mtr1g2201 1 32293980 32294758 Mtr4g1732 4 30008858 30009641 ECH