Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2199 ATGACTTTTCAGTTGCAGAAATTTTGCAGTGAAAGTTTTTTGAAGATGAATATATTTATGGATTCAAGAGATAATAACAATAATAACAACTCATCAGAAGAAGTTGAAAGGTGTTTAGATCCTCAGCTATGGCATGCTTGTGCAGGTGGAATGGTTCAGATGCCAACAGTGAACAGTAAAGTTTATTACTTTCCTCAAGGTCATGCTGAACATGCATGTGGACCTGTTAACTTCATGAATTGTCCAAAGGTTCCACCTTTGATTCCATGCAAAGTTTTGTCTATAAAGTATATGGCTGATCCTGAAACAGATGAGGTTTATGCTAAGCTTAAGCTTGTTCCTTTGAGTGGAAATGGAAATGGAAATGGAAATGATGCTGCAGATTATGACACTGTTGGAGGAAATGAAAATCAAGATAAGCCTGTTTCATTTGCAAAGACATTGACTCAATCTGATGCTAACAATGGTGGAGGTTTTTCTGTTCCTAGGTATTGTGCCGAGACGATTTTCCCTCGTTTGGATTATGCGGCTGATCCCCCTCTTCAGAACATTTTGGCTAAAGATGTTCATGGGGAAACTTGGAAGTTTAGGCATATTTATAGAGGGACGCCGAGGCGGCATCTTTTGACTACTGGTTGGAGTACTTTTGTTAATCAGAAGAAGCTTCTTGCTGGGGATTCAATTGTGTTTTTGAGAGCGGAAAATGGTGATCTTTGTGTTGGGATTCGACGAGCGAAGAAGGGTATTGGTGGTGGACATGAGGATCCATTACCATTAGGGTGGAATCCTGTTGGAGAAAATTTTCCTCTTCCTTGGTTTACACAGAATGAGAATCAAATGGGGAGAAACATTAACAACAACAATGGTTTGAACTCAGGCGCGAATATGACTGGGAGGGAAAAAGTTAGGCCAGAAGCGGTCCTTCAAGCAGTAACTTTAGCTGCTAATAGGCAACCATTTGAGGTTATTTACTACCCTCGCGCAAGTACACCAGAGTTTTGTGTGAAGGCGCCTTTAGTAGAGGCGGCAATGCAGATTCGATGGTGTTCTGGAATAAGATTCAAGATGGCCTTTGAAACCGAGGATTCGTCTCGAATAAGTTGGTTTATGGGAATTGTATCTGGAGTTCAGTTTGTTGATCCCCTTCTCTGGCCTAATTCACCTTGGAGGCTTCTTCAGGTTAAATGGGATGAACCAGATTTACTGCAAAATGTGAGAAGGGTGAGTCCATGGTTGGTTGAATTAGTAGCAAACATTCCATCCATAAACCTTTCACCTTTCTCACAACCAAGGAAGAAATTGAGATTGTCGCCGCACCACGATTTCCCCCTCGACGGCCAAATTTCAGTGCCATCGTTTCCTAGTAACCTTCTAGGTCAGAGCAACCTATTCCGTTGTCTACCCGAAAGTACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTCTTCCGATATCGGATCTCCACCTCAGTAAAGTTCAGGCAGGTCTATTTCCGGCCGGTTTTGTGCCTTTTGATCATGCTGCTAAACTACCTAGTGTCTCTAATAACCTAATGATGCAAAAATCTAGCATGAGTGAGAATGTCTCTTGCTTACTATCCATGGCAAGTTCTACTCAGTCTTCAAAGAAATTCGACGATGAGAAGAAACCTCAGCTTGTTCTTTTCGGCCAAAAAATTCTCACCGAGCAACAGATCTCTAATGACCGTTCATCAGATGGAAATACCAATAAAATGGGTAATTTTTCCGATGGTTCGGGAACTCCTCATCATCAACAAGTCTTACAAAAACGCTCCTCTTGTGAGAGTTTCCAATGGCATAGGGATAACCACGAAGAAACAGAAGCAAGTTTGGAGAGTACGGATCACTGTAAAGTTTTTCTCGAATCAGAAGACGTCGGTCGGACAATCGACCTTTCTTTACTTGGATCTTATGATGAACTGTACAGAAAGCTGGCAGACATGTTTGGCATAGAAAAATATGAGAAGGTAAGCCGCGTGCTCTACCGCGATATATCTGGAGCAGTCAAACACATTGGAGAGGAACCATTCAGTAACTTTACAAGAACAGCGAGGAGGTTGACAATTCTAATGGATTCAAGCAAATAA 2115 0.4208 MTFQLQKFCSESFLKMNIFMDSRDNNNNNNSSEEVERCLDPQLWHACAGGMVQMPTVNSKVYYFPQGHAEHACGPVNFMNCPKVPPLIPCKVLSIKYMADPETDEVYAKLKLVPLSGNGNGNGNDAADYDTVGGNENQDKPVSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAADPPLQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLLAGDSIVFLRAENGDLCVGIRRAKKGIGGGHEDPLPLGWNPVGENFPLPWFTQNENQMGRNINNNNGLNSGANMTGREKVRPEAVLQAVTLAANRQPFEVIYYPRASTPEFCVKAPLVEAAMQIRWCSGIRFKMAFETEDSSRISWFMGIVSGVQFVDPLLWPNSPWRLLQVKWDEPDLLQNVRRVSPWLVELVANIPSINLSPFSQPRKKLRLSPHHDFPLDGQISVPSFPSNLLGQSNLFRCLPESTPAGMQGARHAHYGLPISDLHLSKVQAGLFPAGFVPFDHAAKLPSVSNNLMMQKSSMSENVSCLLSMASSTQSSKKFDDEKKPQLVLFGQKILTEQQISNDRSSDGNTNKMGNFSDGSGTPHHQQVLQKRSSCESFQWHRDNHEETEASLESTDHCKVFLESEDVGRTIDLSLLGSYDELYRKLADMFGIEKYEKVSRVLYRDISGAVKHIGEEPFSNFTRTARRLTILMDSSK* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2199 704 ProSiteProfiles B3 DNA-binding domain profile. 144 246 IPR003340 GO:0003677
Mtr1g2199 704 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 29 700 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr1g2199 704 PANTHER AUXIN RESPONSE FACTOR 29 700 - -
Mtr1g2199 704 SUPERFAMILY DNA-binding pseudobarrel domain 137 279 IPR015300 -
Mtr1g2199 704 ProSiteProfiles PB1 domain profile. 623 704 IPR000270 GO:0005515
Mtr1g2199 704 CDD B3_DNA 143 244 IPR003340 GO:0003677
Mtr1g2199 704 Pfam Auxin response factor 310 393 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mtr1g2199 704 MobiDBLite consensus disorder prediction 567 596 - -
Mtr1g2199 704 SMART B3_2 144 246 IPR003340 GO:0003677
Mtr1g2199 704 Gene3D - 347 421 - -
Mtr1g2199 704 Gene3D - 142 246 IPR015300 -
Mtr1g2199 704 Pfam B3 DNA binding domain 144 245 IPR003340 GO:0003677
Mtr1g2199 704 Gene3D - 619 704 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2199 Mtr-Chr1 32267348 32271074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2199 35 701 B3 DNA Binding Superfamily AT4G30080 56.018 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mtr1g2199 B3 1.9e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2199 - - gmx:100796522 993.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3491 1 46380253 46383290 Mtr1g2199 1 32267348 32271074 ECH
Mtr7g3089 7 47717148 47720090 Mtr1g2199 1 32267348 32271074 ECH
Mtr1g2199 1 32267348 32271074 Mtr1g3491 1 46380253 46383290 ECH
Mtr1g2199 1 32267348 32271074 Mtr1g2199 1 32267348 32271074 ECH
Mtr1g2199 1 32267348 32271074 Mtr4g1726 4 29941141 29944883 ECH