Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2190 ATGGCTTCTGTTATATCAAGAGCCGTAAGGTTTCATGATGATCTTGAAAAAGAGAAATTACAAGAAGGTGAAGAAAGTCACATGGAAATGAGGGCATATGAGATGAGTAGTGAATACAAGCATGGAAAAGATGCAATAAACAAGCCATCATCAAATGGAAGAGGACTTTCAAGAGTTTTTTCTGAAGATTATGATGCAGGAGAGATTTTAGTATTCGATCCTAGAGGACCAAGAATAAATTTATGGAACAAAATATTCTTAGCAGCTTGTTTGATTTCATTGTTTGTGGATCCACTTTTCTTTTACTTACCAGTTGCTAAGAAAGAAAAGTGTATTGATATGTCAATTGGTCTTGAAGTTTCACTTACTATAATTAGAACATTTGTTGATGCATTTTACATTATTCATATCTATATTAGGTTTCAAACTGCTTATATTGCTCCTTCATCTCGTGTTTCTGGTCGAGGAGAACTCATTATTGATTCCTCAAAGATTGCATCAAACTACATGAAAAAAGAACTTTGGTCTGATCTTGTTGCAGCACTACCACTTCCTCAGGTACTCATTTGGGCTGTAATTCCAAATATAAAGGGGTCAGAAATGATTGCATCAAGGCATGTAGTTCGCCTGGTGTCCATTTTCCAGTACCTATTGAGGCTGTATCTTATTTATCCTCTATCATCTAAGATAACCAAGGCAAGTGGAGTAATGATGGAAAAAGCTTGGGCTGGTGCAGCTTATTATTTGACACTCTATATGCTTGCTAGTCATGTTTTAGGATCTACTTGGTACCTGTTATCAATTGAAAGACAAGATGAATGTTGGAAGAAAGCATGTACCCTTCAATATCCACATTGTCAGTATCATTATCTTGATTGTCAAAGCTTAAGTGATCCAAATAGGAATGCTTGGCTTAAATCAAGCAATCTATCAGGTCTATGTGATCAGAACAGTCATTTCTTTCAGTTTGGAATTTTTGATGATGCTGTGACTTTGGAAATAACTAGCTCAAACTTCTTAACCAAGTACTATTATTGTCTTTGGTGGGGATTAAGGAATCTAAGTTCTTCAGGAGAGAATCTCTTAACAAGTACACATGTTGCAGAGATAAATTTCGCTGTGATTGTTGCAATTCTTGGATTGGTCCTTTTTGCACTGCTCATAGGAAATATGCAAACGTACCTTCAATCCACCACTATACGGCTGGAAGAGTGGCGAATCAGAAGGACGGATACAGAAAGATGGATGCATCACAGACAGCTCCCTCATTACCTGAAGGAAAATGTTCGACGCCATGACCAATTTAGATGGGTAGCTACTCGTGGAGTTGACGAGGAAGCAATTCTTAGAGACCTTCCTGTTGATCTAAGACGAGACATTAAACGCCACCTTTGCCTTAATCTAGTTAGACAGGTACCACTATTCGATCAGATGGATGACAGGATGTTAGATGCAATATGTGAAAGGCTAAAACCAACTCTATGCACTCCAGGAACTTGCATAGTTCGCGAAGGCGATCCTGTCGACGAAATGCTCTTCATCGTTCGAGGACGTTTAGATTCTTGCACGACCAACGGTGGAAGAACTGGTTTTTTCAACACCTGCAGAATAGGCTCAGGCGACTTCTGCGGTGAAGAGCTTTTACCATGGGCCTTAGACCCTCGTCCGACCGCTGTGCTTCCTTCATCAACTCGCACAGTGAGAGCCATCACCGAAGTGGAAGCATTTGCACTCATTGCCGAGGATTTAAAGTTTGTAGCAGCACAATTCCGCCGGTTACATAGCAAACAACTGAGACAAACCTTTAGATTCTATTCACATCAGTGGAGGACATGGGCTGCATGTTTTATACAAGCAGCTTGGTTTCGGTATAAGAGAATGAAAGAGACAAATGAGGTTAAGGAAAAGGAGAATCTTATGATGATGTCAAATGTGAAATATTATGGAAATGATGATTCTCAATATTTCTCTGCACCTCTGCAGGTGCCAAAAGGATCAAGTTATTCAATGTATTCTGGAAAACTAGTAGGTAGTCTAAGGAGAGGAAGAAGCATGAGATATGGTTCTGAACTTGATATGCTTGGTACATTAAGGAAGCCTATTGAACCAGATTTTAATGATGATGGTGATTAA 2133 0.3919 MASVISRAVRFHDDLEKEKLQEGEESHMEMRAYEMSSEYKHGKDAINKPSSNGRGLSRVFSEDYDAGEILVFDPRGPRINLWNKIFLAACLISLFVDPLFFYLPVAKKEKCIDMSIGLEVSLTIIRTFVDAFYIIHIYIRFQTAYIAPSSRVSGRGELIIDSSKIASNYMKKELWSDLVAALPLPQVLIWAVIPNIKGSEMIASRHVVRLVSIFQYLLRLYLIYPLSSKITKASGVMMEKAWAGAAYYLTLYMLASHVLGSTWYLLSIERQDECWKKACTLQYPHCQYHYLDCQSLSDPNRNAWLKSSNLSGLCDQNSHFFQFGIFDDAVTLEITSSNFLTKYYYCLWWGLRNLSSSGENLLTSTHVAEINFAVIVAILGLVLFALLIGNMQTYLQSTTIRLEEWRIRRTDTERWMHHRQLPHYLKENVRRHDQFRWVATRGVDEEAILRDLPVDLRRDIKRHLCLNLVRQVPLFDQMDDRMLDAICERLKPTLCTPGTCIVREGDPVDEMLFIVRGRLDSCTTNGGRTGFFNTCRIGSGDFCGEELLPWALDPRPTAVLPSSTRTVRAITEVEAFALIAEDLKFVAAQFRRLHSKQLRQTFRFYSHQWRTWAACFIQAAWFRYKRMKETNEVKEKENLMMMSNVKYYGNDDSQYFSAPLQVPKGSSYSMYSGKLVGSLRRGRSMRYGSELDMLGTLRKPIEPDFNDDGD* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2190 710 Gene3D - 86 398 - -
Mtr1g2190 710 Gene3D Jelly Rolls 472 592 IPR014710 -
Mtr1g2190 710 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 10 707 - -
Mtr1g2190 710 Pfam Ion transport protein 81 400 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Mtr1g2190 710 SMART cnmp_10 474 605 IPR000595 -
Mtr1g2190 710 ProSiteProfiles cAMP/cGMP binding motif profile. 474 559 IPR000595 -
Mtr1g2190 710 PANTHER PROTEIN CNGC15A 10 707 - -
Mtr1g2190 710 CDD CAP_ED 474 605 IPR000595 -
Mtr1g2190 710 Gene3D Helix hairpin bin 402 465 - -
Mtr1g2190 710 Pfam Cyclic nucleotide-binding domain 497 584 IPR000595 -
Mtr1g2190 710 SUPERFAMILY Voltage-gated potassium channels 73 396 - -
Mtr1g2190 710 PRINTS EAG/ELK/ERG potassium channel family signature 137 146 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr1g2190 710 PRINTS EAG/ELK/ERG potassium channel family signature 254 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr1g2190 710 PRINTS EAG/ELK/ERG potassium channel family signature 343 360 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr1g2190 710 PRINTS EAG/ELK/ERG potassium channel family signature 369 380 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr1g2190 710 PRINTS EAG/ELK/ERG potassium channel family signature 387 396 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr1g2190 710 PRINTS EAG/ELK/ERG potassium channel family signature 437 444 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr1g2190 710 SUPERFAMILY cAMP-binding domain-like 404 596 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2190 Mtr-Chr1 32182604 32187161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2190 52 708 Ion Channels AT2G28260 62.557 0.0 868
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2190 K05391 - gmx:100815543 1153.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2190 1 32182604 32187161 Mtr1g2190 1 32182604 32187161 ECH