Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2189 ATGTCTACCTCTGCAACATCCTTAGTACTTCCATCTCTCTTCACCAAAAACTCCCCTCAATGTTTCTCTTCACTCCCTTCTCTTTCCCTCAACCCTAATTTCAAACCCTTTTCCTTTTCCTCTGTTTCTCTTCGTCCATCTTTGTCTATTTCCCATCGTTTCATTTCTCGTGTCGCTGTTTCTTCTGAATTTGACCAGGAAGAAGATACCTTTGATGATGGTGATGATACCCCTAGTTATTCTCCTAACCAGAGGTTGTTTGTTGGTAACCTTCCTTTCAGTGTTGACAGTGCTCAACTTGCTGAGATTTTTGAAAACGCTGGGGATGTTGAAATGGTCGAGGTGATTTATGATAAGAGTACTGGAAGAAGCAGAGGATTTGGTTTTGTTACTATGTCTTCTGCAGCTGAAGTTGAAGCGGCTGCTCAGCAGTTGAATGGCTATGTGGTGGATGGAAGAGAATTGAGAGTGAATGCTGGACCACCACCTCCTCCTCGTAGTGAGAACTCCCGTTTTGGTGAGAATCCTCGTTTTGGTGGTGATCGTCCAAGAGGTCCTCCAAGAGGTGGTTCTTCAGATGGTGACAACCGTGTTCATGTTGGTAACCTTGCTTGGGGTGTTGACAACTTGGCACTTGAGTCATTGTTTGGTGAACAAGGACAGGTTTTGGAAGCAAAGGTAATCTATGACAGGGAAAGTGGAAGATCTAGAGGATTTGGCTTTGTGACTTTCAGTAGCGCTGATGAGGTCGACAGTGCTATTCGAACCTTAGATGGCGCGGACTTGAATGGCAGAGCTATCCGAGTCTCACCGGCAGATAGTAGACCAAAGCGTCAATTTTGA 843 0.4508 MSTSATSLVLPSLFTKNSPQCFSSLPSLSLNPNFKPFSFSSVSLRPSLSISHRFISRVAVSSEFDQEEDTFDDGDDTPSYSPNQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNGRAIRVSPADSRPKRQF* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2189 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 268 IPR000504 GO:0003723
Mtr1g2189 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 156 IPR000504 GO:0003723
Mtr1g2189 280 PANTHER OS02G0815200 PROTEIN 1 280 - -
Mtr1g2189 280 MobiDBLite consensus disorder prediction 154 197 - -
Mtr1g2189 280 PANTHER 29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 1 280 - -
Mtr1g2189 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 162 IPR000504 GO:0003723
Mtr1g2189 280 SUPERFAMILY RNA-binding domain, RBD 76 193 IPR035979 GO:0003676
Mtr1g2189 280 Gene3D - 58 193 IPR012677 -
Mtr1g2189 280 Gene3D - 194 280 IPR012677 -
Mtr1g2189 280 SMART rrm1_1 197 270 IPR000504 GO:0003723
Mtr1g2189 280 SMART rrm1_1 85 158 IPR000504 GO:0003723
Mtr1g2189 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 274 IPR000504 GO:0003723
Mtr1g2189 280 SUPERFAMILY RNA-binding domain, RBD 193 279 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2189 Mtr-Chr1 32176449 32178970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2189 86 279 Eukaryotic Initiation Factors Gene Family AT3G16380 29.897 9.73e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2189 - - gmx:100786275 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2189 1 32176449 32178970 Mtr1g2189 1 32176449 32178970 ECH