Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2186 ATGGAGGGAATTACCAATGGCCATGTTGAAGCAACCTTTTGTTTGAGCAAAAATGGTGGTGATCCACTCAACTGGGGCGCGGCGGCGGAGTCATTGACAGGGAGTCATTTGGATGAGGTGAAGCGTATGGTGGAGGAGTATCGTAACCCGTTGGTTAAAATCGGCGGTGAGACACTTACCATTGCTCAGGTGGCTGGAATTGCTTCCCATGATAGTGGTGTTAGGGTGGAGCTTTCGGAGTCGGCAAGGGCCGGTGTTAAGGCAAGTAGTGACTGGGTGATGGATAGTATGAATAAAGGTACGGACAGTTATGGTGTTACCACCGGTTTTGGTGCTACTTCTCACCGGAGAACTAAACAAGGTGGTGCCTTGCAGAAGGAGCTAATTAGGTTTTTGAATGCCGGAATATTTGGCAATGGTACAGAATCAAATTGTACACTACCACATACAGCAACAAGAGCTGCAATGCTTGTGAGGATCAACACTCTTCTTCAAGGGTATTCTGGTATTAGATTTGAAATCTTGGAAGCTATCACAAAGCTCTTGAACAACAATATTACCCCATGTTTACCACTTCGCGGTACAATCACAGCTTCCGGTGATCTTGTTCCACTCTCTTACATTGCCGGTTTATTAACGGGCAGACCCAACTCTAAAGCCGTTGGACCGTCTGGAGAAATTCTCAATGCCAAGGAAGCTTTTCAACTTGCTGGCATTGGTTCTGATTTCTTTGAATTGCAACCTAAGGAAGGTCTTGCTCTTGTTAATGGAACTGCTGTTGGTTCTGGTTTAGCTTCTATTGTTCTGTTCGAAGCAAATGTACTAGCGGTTTTGTCTGAAGTTATGTCGGCAATTTTCGCTGAAGTTATGCAAGGGAAACCTGAATTTACTGATCATTTGACTCATAAGTTGAAGCATCACCCTGGTCAAATTGAAGCTGCTGCTATTATGGAGCATATTTTGGATGGAAGCGCTTATGTTAAAGCCGCTAAGAAGTTACACGAGACTGATCCTTTGCAAAAGCCTAAACAAGATCGTTATGCACTTAGAACTTCACCTCAATGGCTTGGTCCTTTGATTGAAGTGATAAGATTTTCGACCAAGTCTATTGAAAGAGAGATTAACTCGGTCAACGACAACCCTTTGATCGATGTTTCAAGGAACAAGGCCATACATGGTGGTAACTTTCAAGGAACACCTATCGGAGTTTCAATGGACAACACTCGTTTAGCTCTTGCTTCGATCGGTAAACTCATGTTTGCTCAATTCTCTGAGCTTGTTAATGATTTTTACAACAATGGTTTGCCTTCGAATCTTACTGCAAGTAGAAACCCAAGTTTGGATTATGGTTTCAAGGGATCTGAAATTGCTATGGCTTCTTATTGCTCCGAGTTACAATATCTTGCTAACCCTGTCACCACCCATGTGCAAAGTGCTGAGCAACACAACCAAGACGTTAACTCTTTGGGTTTGATTTCTTCTAGAAAAACAAACGAGGCTATTGAGATCTTAAAGCTCATGTCTTCCACTTTCTTGATCGCGCTTTGCCAAGCAATTGACTTGAGGCATTTGGAAGAGAATTTGAGGAACACTGTCAAGAACACTGTAAGCCAAGTTGCTAAGAGAACACTCACAACCGGTGTCAATGGAGAACTTCATCCTTCAAGATTTTGCGAGAAAGATTTGCTCAAAGTTGTCGACAGGGAGTATGTGTTTGCCTATGCTGATGATCCTTGCCTAGCTACATACCCTTTGATGCAAAAGTTGAGACAAGTGCTTGTGGATCATGCATTAGTGAATACCGAAGGAGAGAAGAATTCGAACACATCAATCTTCCAAAAGATTGCAACATTTGAGGATGAATTGAAGGCTATCTTGCCAAAGGAAGTTGAAAGTGCAAGGACAGCATATGAAAATGGACAAAGTGGAATTTCAAACAAGATTAAGGAATGTAGGTCTTATCCATTGTACAAGTTTGTTAGAGAGGAGTTGGGAACAGCGTTGCTAACCGGTGAAAAAGTGATATCGCCAGGAGAAGAGTGCGACAAATTGTTCACAGCTATGTGCCAAGGTAAAATTGTTGATCCTCTTATGGAATGTCTCGGAGAGTGGAACGGCGCTCCTCTTCCAATTTGTTAA 2139 0.4273 MEGITNGHVEATFCLSKNGGDPLNWGAAAESLTGSHLDEVKRMVEEYRNPLVKIGGETLTIAQVAGIASHDSGVRVELSESARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNCTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEILNAKEAFQLAGIGSDFFELQPKEGLALVNGTAVGSGLASIVLFEANVLAVLSEVMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKAAKKLHETDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGSEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLIALCQAIDLRHLEENLRNTVKNTVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDREYVFAYADDPCLATYPLMQKLRQVLVDHALVNTEGEKNSNTSIFQKIATFEDELKAILPKEVESARTAYENGQSGISNKIKECRSYPLYKFVREELGTALLTGEKVISPGEECDKLFTAMCQGKIVDPLMECLGEWNGAPLPIC* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2186 712 Gene3D - 525 646 IPR023144 -
Mtr1g2186 712 SUPERFAMILY L-aspartase-like 21 712 IPR008948 GO:0003824
Mtr1g2186 712 Pfam Aromatic amino acid lyase 59 533 IPR001106 -
Mtr1g2186 712 CDD PAL-HAL 57 522 IPR001106 -
Mtr1g2186 712 PANTHER HISTIDINE AMMONIA-LYASE 18 712 IPR001106 -
Mtr1g2186 712 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 194 210 IPR022313 GO:0016841
Mtr1g2186 712 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 18 712 - -
Mtr1g2186 712 Gene3D - 13 258 IPR024083 -
Mtr1g2186 712 Gene3D Fumarase/aspartase (Central domain) 259 707 - -
Mtr1g2186 712 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 21 701 IPR005922 GO:0005737|GO:0006559|GO:0016841
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2186 Mtr-Chr1 32105170 32109769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2186 7 712 Monolignol Biosynthesis Gene Families AT2G37040 82.353 0.0 1245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2186 K10775 - gmx:100803857 1284.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3482 1 46259513 46266318 Mtr1g2186 1 32105170 32109769 ECH
Mtr7g3096 7 47905368 47908399 Mtr1g2186 1 32105170 32109769 ECH
Mtr1g2186 1 32105170 32109769 Mtr1g3482 1 46259513 46266318 ECH
Mtr1g2186 1 32105170 32109769 Mtr1g2186 1 32105170 32109769 ECH