Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2180 ATGAGGAACTGTGTTTCCTGCATTGTTCTCTTTTTACTCTCTTTATCTCTGTTGCCAAAGATTCATTCCGCCCCTTCCTTTTTCACCGATGAAATCTACAAGGAACTTAAGAGTATCGCTGTTTTTTTGAATCAGGATATTAAATCCAGTTTAAGTTTCTGCATTAAGGATCCGAAAAAAGATTGGGAGGAAGCTTTTGATTTTACAGGAAAGTTGGATTTCGTTGATTCTTGTGTTAAGAAAAAAGGAGATTTCCGGGATCGAATATGTACTGCAGCTGAAATAAGGTACTACTTCCATGGTTTCGTGGCACAGGGAGGAGCATCATCTGAAAATTATGTAAAACCTAACAAGAATTGCAATTTGACCTCATGGGTTTCCGGTTGTGAACCTGGATGGGCTTGTAGTGCAGGCAAGGATATTGATCTAAAAAAGGACATAAAGGAAATTCCAAAGAGAACCAAAAACTGTAAACCTTGTTGCGAGGGTTTTTTCTGTCCTCAAGGATTGACTTGTATGATACCTTGCCCCCTAGGTTCTTATTGTCCACTTGCAAAACTGAACAAACAGACTGGACTATGTGAACCATATAGTTACCAGATACCTTCGGGAGAAACAGATCATGATTGTGGTAGTGCTGATATTTGGACTGGTGTGCTGAACAATAGTGATATTTTCTGTTCTCCTGGATCATACTGCCCAACTACAACACGTAAAGTTTCTTGCGATCGTGGATATTACTGCAGGATGGGTTCTACTCATCAGAATCTATGCTCCAGTTTCAGCCAATGTAATCCAAACACAACAACCCAAAATATGCATGCTTATGGTGCTCTGCTTATTGTTGGATTGAGTACTGTCCTGATCTTCATTTATAACTGTTCTGATCAAGTTCTAGCTACACGAGAAAGAAGGAAAGCTAAATCAAGAGAAGCTGCAGCAAGACAGGTGAGAGAAACTGTACAAGCTCGAGAAAGGTGGAAGTTGGCAAAAGATGCTGCTAAAAAGCATAAGTTGGGATTAACGCACCAGCTATCACGCACTTTTTCTCGCAAAAAATCAGTAAAGCAAGGGGAGCAAGCTAATCCTGCTATGAGCAATTCAGGTTTGCCACCTCCTCCAGCACTGGCATCTGCAGCTATAAAAGGCCAAACAAAGGAACCTAGCAACCTTACTAAAATGTTGGATTCCTTTGACGACCCTAATAGTAATGAAGGATTCAATCTAAAGATTGGGGACAAAAATATTAAAAAGCAAATGCCAAAGGGAAAAAATTTACATACGCAAAGTCAAATTTTAAGATATGCTTATGGTCAGATTGAGAAGGAGAAAGCTCAACAAGAGAAAAACAATAACTTGACCTTCTCAGGAGTGATTTCAATGGCTTCTGAAGTTGAGGAGGATATTAAATCGAGGCCTGAGATCGAGGTAGCTTTCAAAGATGTAACCCTTACTTTGAAAGGGAAAAGAAAACATATACTGAGGTGTGTGACAGGTAAAATCATGCCCGGTCGAGTTTCAGCTGTGATGGGTCCCTCGGGAGCTGGCAAAACTACATTTCTTTCTGCCCTGGCAGGGAAAATAAGAGGATGCACTATGACAGGCTCAATTTTTGTCAATGGAAGACCTGAATCCATTCACTGTTATCAGAAAATTGTTGGATATGTGCCACAAGATGATATTGTGCATGGGAACTTGACGGTGGAGGAAAATCTTCGTTTCAGTGCAAGATGCAGACTATCTGATGACATGCCAAAACCAGATAAGGTTCTGATTGTTGAAAGAGTAATTGAAACCTTGGGACTCCAGGCAATAAGAGATTCCCTTGTTGGGACAGTAGAGAGGCGAGGCATATCTGGTGGACAACGAAAACGTGTAAATGTAGGGTTGGAGATGGTTATGGAGCCTTCATTGTTAATCTTAGATGAGCCTACAACTGGTCTGGACAGTGCATCTTCCTCTTTACTGCTGAAAGCACTTCGTCGTGAAGCTGCTGAAGGGGTAAATGTTTGCATGGTACTTCATCAACCAAGCTATACTTTGTTCAGAATGTTTGATGATATAATATTTCTAGCAAAAGGTGGCCTTACTGCATATCACGGACCTGTAAAAAAAGTAGAAGAATACTTTGCCGGCATTGGTATCCCTGTTCCTGATCGCGTGAATCCTCCAGACCATTTTATTGACATTCTGGAAGGTTTAGTGAAACCAAATGAAGGTGTGACTTATCAACAACTACCTGTCAGATGGATGATTCATAATGGTTACCCAGTACCACCAGATATGCTTCATTATGCTAATGAAATTTCTGCTTCGTCTTCCTCAACTGTAAATCATGAAATAAAGGGTGCTGATGATGCTGCTGATCAATCATTTGCCGATGAGTTTTGGGAGGATATGAAAAGTAATGTGCAGTTGCATAAAGATCGTATAGAGGCAACCTTCTTATCGACTAAGGACTTATCTGGCCGAATAACTCCTGGTGTAGGTCGGCAGTATAGATACTACCTTGGGCGGGTTGGTAAGCAGCAGCTGCGAGAAGCAAAAGCACAAGCAGTTGACTATCTCCTTTTATTAGTTGCTGGTGCTATCCTGGGAACTCTTACTAAAGTAAACGATGAAACATTTGGATCTCTTGGATATACATATACTGTCATTGCTGTATCTCTACTTTGCAAGATTGCAGCTCTGAGATCATTTTCTATGGATAAATTACAATACTGGAGGGAGAGTGCATCAGGGATCAGCAGTCTAGCTCATTTTTTGGCCAAAGATACAATTGATCTTTTCAGTACAATCGTCAAACCTCTCATTTATTTATCCATGTTCTACTTTTTTAGCAATCCAAGGTCAAGCTTCGAAAGTAATTATGCGGTTTTGGTATGCCTTGTATACTGTGTGACTGGCATGGCATACGCATTAGCAATTTATTTTGAGCCTGCTCCTGCTCAGCTGTGGTCAGTGCTTCTCCCTGTTGTTATGACTCTCATTGCAAACCAAACAAGAGATACTACCTTTATGAAGATCCTAATTAAAATGTGTTACCCAAAATGGGCTTTGGAGGCCTTTATTATTGCAAATGCTGAAAGGTACACCGGCGTATGGCTGATAACTCGTTGTAGTTCACTGATGAATAGCGGTTATAATGTCAATGATTGGCCTATTTGTCTAGCTGTCCTCATTTTTTACGGTATAGTTGCTCGTATTGTGGCCTTCATCTGTCTCATGATCACCCAAAAGAAGTGA 3246 0.406 MRNCVSCIVLFLLSLSLLPKIHSAPSFFTDEIYKELKSIAVFLNQDIKSSLSFCIKDPKKDWEEAFDFTGKLDFVDSCVKKKGDFRDRICTAAEIRYYFHGFVAQGGASSENYVKPNKNCNLTSWVSGCEPGWACSAGKDIDLKKDIKEIPKRTKNCKPCCEGFFCPQGLTCMIPCPLGSYCPLAKLNKQTGLCEPYSYQIPSGETDHDCGSADIWTGVLNNSDIFCSPGSYCPTTTRKVSCDRGYYCRMGSTHQNLCSSFSQCNPNTTTQNMHAYGALLIVGLSTVLIFIYNCSDQVLATRERRKAKSREAAARQVRETVQARERWKLAKDAAKKHKLGLTHQLSRTFSRKKSVKQGEQANPAMSNSGLPPPPALASAAIKGQTKEPSNLTKMLDSFDDPNSNEGFNLKIGDKNIKKQMPKGKNLHTQSQILRYAYGQIEKEKAQQEKNNNLTFSGVISMASEVEEDIKSRPEIEVAFKDVTLTLKGKRKHILRCVTGKIMPGRVSAVMGPSGAGKTTFLSALAGKIRGCTMTGSIFVNGRPESIHCYQKIVGYVPQDDIVHGNLTVEENLRFSARCRLSDDMPKPDKVLIVERVIETLGLQAIRDSLVGTVERRGISGGQRKRVNVGLEMVMEPSLLILDEPTTGLDSASSSLLLKALRREAAEGVNVCMVLHQPSYTLFRMFDDIIFLAKGGLTAYHGPVKKVEEYFAGIGIPVPDRVNPPDHFIDILEGLVKPNEGVTYQQLPVRWMIHNGYPVPPDMLHYANEISASSSSTVNHEIKGADDAADQSFADEFWEDMKSNVQLHKDRIEATFLSTKDLSGRITPGVGRQYRYYLGRVGKQQLREAKAQAVDYLLLLVAGAILGTLTKVNDETFGSLGYTYTVIAVSLLCKIAALRSFSMDKLQYWRESASGISSLAHFLAKDTIDLFSTIVKPLIYLSMFYFFSNPRSSFESNYAVLVCLVYCVTGMAYALAIYFEPAPAQLWSVLLPVVMTLIANQTRDTTFMKILIKMCYPKWALEAFIIANAERYTGVWLITRCSSLMNSGYNVNDWPICLAVLIFYGIVARIVAFICLMITQKK* 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2180 1081 Pfam ABC-2 type transporter 675 1081 IPR043926 GO:0140359
Mtr1g2180 1081 SMART AAA_5 503 695 IPR003593 -
Mtr1g2180 1081 MobiDBLite consensus disorder prediction 339 386 - -
Mtr1g2180 1081 Gene3D - 463 712 IPR027417 -
Mtr1g2180 1081 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 477 718 IPR003439 GO:0005524
Mtr1g2180 1081 CDD ABCG_EPDR 475 701 - -
Mtr1g2180 1081 PANTHER WHITE-BROWN COMPLEX HOMOLOG PROTEIN 30-RELATED 24 1077 - -
Mtr1g2180 1081 Pfam ABC transporter 497 645 IPR003439 GO:0005524
Mtr1g2180 1081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 474 700 IPR027417 -
Mtr1g2180 1081 ProSitePatterns ABC transporters family signature. 618 632 IPR017871 GO:0005524
Mtr1g2180 1081 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 24 1077 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2180 Mtr-Chr1 32003956 32013375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2180 504 697 Calmodulin-binding Proteins AT2G36910 26.733 5.59e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2180 - - gmx:100812387 1794.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3475 1 46200107 46206807 Mtr1g2180 1 32003956 32013375 ECH
Mtr7g3103 7 47984691 47990871 Mtr1g2180 1 32003956 32013375 ECH
Mtr1g2180 1 32003956 32013375 Mtr1g3475 1 46200107 46206807 ECH
Mtr1g2180 1 32003956 32013375 Mtr1g2180 1 32003956 32013375 ECH
Mtr1g2180 1 32003956 32013375 Mtr4g2385 4 37437180 37447080 ECH