Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2171 ATGGTTCTTTCTTTTGTTGGGAAGATACAAAAGGGTATTTCACACTTTGTACACAAAAGACATGATTTCAGTGAAGAGTTGGTACCAGAAGATGTTAGGGAAGGATACTTTGCTGTCGTTGCAATGAAAGATGGAGAAACCAAAAAGTTTATTATTGGGTTGGAGTACTTAAGTGATCCTGAGTTTTTGGGATTACTAGGTCAAGCACAGGAAGAGTATGGTTTCATACAGGAAGGAGCTATTGCTGTCCCTTGTAGGCCTCAAGAATTGCAGAACATTTTAGATGGTCAGAGATTACTATGA 303 0.3861 MVLSFVGKIQKGISHFVHKRHDFSEELVPEDVREGYFAVVAMKDGETKKFIIGLEYLSDPEFLGLLGQAQEEYGFIQEGAIAVPCRPQELQNILDGQRLL* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2171 100 PANTHER SMALL AUXIN-UP RNA-RELATED 1 99 - -
Mtr1g2171 100 Pfam Auxin responsive protein 26 94 IPR003676 GO:0009733
Mtr1g2171 100 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 1 99 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2171 Mtr-Chr1 31880357 31880659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2171 29 94 Calmodulin-binding Proteins AT3G43120 40.909 3.61e-09 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2171 - K14488 mtr:MTR_1g063330 184.496