Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2170 ATGGTTCTTTCTTTTGTTGGGAAGATACAAAAGGGTATTTCACACTTTGTACACAAAAGGCATGATTTCAGTGAAGAGTTAATGGCAGAAGATGTTAGGGAAGGATACTTTGCTGTTGTTGCAATGAAGGATGGAGAAACTAAAAGGTTTATCATTGGTTTAGAATACTTGAGTGATCCTGAATTCTTGGGACTACTAGATCAAGCTCAGGAAGAGTATGGTTTTATACAGAAAGGAGCTATTGCTGTCCCTTGTCTGCCTCAACAATTACAGAACATTCTAGATGGTCATAGATGA 297 0.3771 MVLSFVGKIQKGISHFVHKRHDFSEELMAEDVREGYFAVVAMKDGETKRFIIGLEYLSDPEFLGLLDQAQEEYGFIQKGAIAVPCLPQQLQNILDGHR* 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2170 98 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 1 98 IPR003676 GO:0009733
Mtr1g2170 98 Pfam Auxin responsive protein 27 94 IPR003676 GO:0009733
Mtr1g2170 98 PANTHER SMALL AUXIN-UP RNA-RELATED 1 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2170 Mtr-Chr1 31877172 31877468 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2170 13 85 Calmodulin-binding Proteins AT3G43120 38.824 2.30e-09 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2170 - K14488 mtr:MTR_1g063330 199.904