Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2161 ATGGGAGGAAAGTGTCCACACAGGAAAGTGAAGAAGAGAAGATTATCTCACAAAACTGATCGGCGTTCAAAATTCTTGATTAAAGGAGATGACATGGTTTATGATGAATTGAATAAGCCTCAAGAAGATAGAAAGCCTTTACCTCTTGATGAAGATTTACCTGGAATGGGACAACACTATTGCCTTCACTGCGATCGATTCTTTGCCAGTGTAGCCGTGAGGGACGAGCATTTTAAGACAAAAAAACACAGGAGACGTGTGAAACAAATGATGGGTGACGCACCACACACTCAACTTGATGCTGATTTAGCTGGAGGGATGGGAATGCCAGATAATGGACCAAAGTTAATGTCTATGTAA 360 0.4139 MGGKCPHRKVKKRRLSHKTDRRSKFLIKGDDMVYDELNKPQEDRKPLPLDEDLPGMGQHYCLHCDRFFASVAVRDEHFKTKKHRRRVKQMMGDAPHTQLDADLAGGMGMPDNGPKLMSM* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2161 119 PANTHER EXPRESSED PROTEIN 1 119 - -
Mtr1g2161 119 MobiDBLite consensus disorder prediction 1 21 - -
Mtr1g2161 119 Pfam Zinc-finger double-stranded RNA-binding 58 84 IPR022755 -
Mtr1g2161 119 MobiDBLite consensus disorder prediction 1 22 - -
Mtr1g2161 119 SUPERFAMILY beta-beta-alpha zinc fingers 46 109 IPR036236 -
Mtr1g2161 119 MobiDBLite consensus disorder prediction 80 119 - -
Mtr1g2161 119 SMART ZnF_U1_5 56 90 IPR003604 GO:0003676|GO:0008270
Mtr1g2161 119 Gene3D Classic Zinc Finger 46 109 - -
Mtr1g2161 119 ProSitePatterns Zinc finger C2H2 type domain signature. 61 83 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2161 Mtr-Chr1 31767522 31770733 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2161 3 118 C2H2 Transcription Factor Family AT2G36930 77.586 2.01e-64 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2161 K14821 - zju:107431907 228.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2161 1 31767522 31770733 Mtr1g2161 1 31767522 31770733 ECH