Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2158 ATGGGTCGTCGAAAAATTAAGATAGAGAGGGTGAAAGACCCCAACACAAGGCAGATCACATTCTCAAAGCGTCGAACCGGTTTATTCAAAAAAGCAAATGAATTGTCCATTTTGTGCGGAGCAGAAGCCGCTATTGTTGTGTTCTCTCCAGGTAACAATCCTTACTCTTTTGGTCACCCTGGAGTTGATTTTGTTGCTACCAAGTATCTCCAATTAGAGCCAAAACCAAGTAACTCTCTAGAAAACCGCACTTCTGATGCTTCCAAGATGGAAAATTTGAATCTAGAACTTGCTGATGTGTTAGCACAAATTCGGGATGGTGAAAAGCAGGCTGAGGCTCATGATGAGATTTTTAAGCAAAATGATGTGACAAAACTCTCTGAGCTTAAAGAATTGAGAGGTTCATATAAAGAGCTTCAAGATTGCGTAAAATTGCGGCTCAATGATATCGAGATATCTGAATGTTTGATGCTTCTAGCTCAAGATCCAGTGGTGGGAATAAAAGCGAAATTGTCAAAAAATAAAAGAAGAAAAAATTGA 540 0.3907 MGRRKIKIERVKDPNTRQITFSKRRTGLFKKANELSILCGAEAAIVVFSPGNNPYSFGHPGVDFVATKYLQLEPKPSNSLENRTSDASKMENLNLELADVLAQIRDGEKQAEAHDEIFKQNDVTKLSELKELRGSYKELQDCVKLRLNDIEISECLMLLAQDPVVGIKAKLSKNKRRKN* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2158 179 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Mtr1g2158 179 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr1g2158 179 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr1g2158 179 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr1g2158 179 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr1g2158 179 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mtr1g2158 179 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 170 - -
Mtr1g2158 179 CDD MADS 2 60 - -
Mtr1g2158 179 Coils Coil 90 110 - -
Mtr1g2158 179 PANTHER MADS BOX PROTEIN 2 170 - -
Mtr1g2158 179 Gene3D - 14 83 IPR036879 GO:0003677|GO:0046983
Mtr1g2158 179 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2158 Mtr-Chr1 31712259 31712798 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2158 1 161 Type I MADS-box Gene Family AT2G34440 44.186 5.82e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr1g2158 SRF-TF 6.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2158 - - mtr:MTR_1g054265 274.633