Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2157 ATGTCAAAAAACTGCTTCAACCTCAAAACAATGACGTATTCATCACCAAGACAACCCATTAACCTTCCCACCGATCCCAACCTCTCTTTAACCTCCTTCCTCTTCCAATCAACTTCCTCTGTCGCCGACACCATCGCCCTCGCTGACGCCGAAACCGGCAACTCCCTTACCTTCCGCCAGCTCAAAATCCATGTTTCCGCCCTCTCCCACTCTTTGCTCCACCTTGGTATTCGACGAGGCGACGTGGTTTTGCTATTAGCACCTAACTCAATACGCTTCCCTGTTTGCTTCCTTGCTATAGTCGCCATAGGTGCTATTGCCACCACCTCTAGTCCTTTATACACCCTCTCCGAACTCTCTAGGCAAATCCATGACTCCAAACCTAAGCTTGTTATAACCGTATCTGAACTCTTCAAGAAAATCGAAGCATTGACCTTAGGTTTACCATTAATATTACTCGACGACCCTTCCAAGAAGTTTGGTGCTAGGGTTTCAAGCTATGAGGATCTGATCAGGGAGTCATACAATAGCTCCGATGATATTCCGGTGAACAGAGATGTGTCTCAATCCGACGTGGCGGCGATTCTTTACTCTTCAGGCACAACGGGGAGAAGCAAGGGAGTGATGCTGACTCACCAGAACTTAATAGCTACAGCGGTGGCGGGAGCGGTGGATCAGGACCAGAACGGCGAGGGGAAGAACGTGTTTGTGTGTTTTGTGCCAATGCACCACGTGATGGGGTTAGTGGGGATAACGTACACGCAGCTGCGGAGAGGGAACACGGTGGTGTCGTTTGGTGGTAGATTTGATTTGGAGAAGACTTTTGCGGCGGTGGAGAAGTTTAAGGTGACGCATTTGTATGTTGCTCCGCCGGTGATGGTGGAGCTGATCAAGCGGCGTGAGGTTGTTATCGGTTACGAGTTGTCGTCGCTGAAGTATCTCGTCGGTGGTGCTGCTCCGTTGGGGAAAGATTTGATGCAAGAGTGTACTAAGATTCTTCCCCATGTCCACGTCATCCAGGGGTATGGCATGACTGAAGCATGTGGACTTGTTTCCATAGAAAATCCAAAAGAAGGAAGTCTCATTTCGGTTTCTGGTTCAACTGGAACACTAATTCCAAGTGTAGAATCTCGTATAATTAATTTGGCAACATTGAAGCCCCTTCCACCGAATCAATTAGGGGAAATTTGGCTACGAGGACCTACTATAATGCAAGGATACTTTAACAATCCAGAAGCAACAAAGTTGGCCATTAATGATCAAGGTTGGATGATTACAGGAGATCTTGGATATTTTGACGAAAAGGGGCAGCTATTTGTTGTGGATCGAATAAAAGAGCTCATCAAATGTAGTGGTTATCAAGTTGCGCCAGCTGAGCTTGAAGACTTGTTGGTTTCTCATCCTGAAATTTCTGATGCCGGGGTGATACCATCCCCTGATGCCAAAGTTGGCGAAGTTCCGGTGGCTTTTGTTGTTCGCTTACCCAATAGCTCAATAACCAAAGAAGACATTCAAAAGTTTGTAGCAAAACAGGTTGCACCATACAAAAGGTTGCGGCGTGTGACTTTTTTAGAGAAGATTCCAAAGTTAGCCACTGGAAAGATCTTAAGAAAGGATCTTGGATATGGCATGACTGAAGCATGTGGACTTATTTCCTTTGAAAATCCAAAGGAAGGAGCCTTCCTTTCGAATTCAGGTTCAACTGGAAAACTAGTTCCAAGTGTAGAATCCCAAATTGTCAGTTTGCAAACATCGAAGTCCCTTCCACCGAATCAATTAGGGGAAATTTGGCTACGAGGACCTGTTATGATGCAAGGATACTTTAACAATCCAGAAGCAACAAAACAAACCATTAATGATCAGGGTTGGACGCTTACCGGCGATCTTGGATATTTTGATGAAAAAGGACAACTATTTGTCGTGGATAGAATAAAAGAGCTCATCAAGTGTAATGGGTATCAAGTGGCGCCTGCTGAACTTGAAGACTTACTAATTTCTCATCCTGAAATTTCTGATGCCGGGGTGATTCCGTCTCCTGATGCCAAAGCTGGCGAGGTTCCAGTTGCTTTTGTTGTTCGCTCACTCAATAGCTTGATAACTGAAGAAGACATCAAGAAATTTGTAGCAAAAGAGGTTGCACCATACAAAAGGTTGCGGCGAGTGACTTTTATAGAGAAGATTCCAAAGTCACCCACGGGAAAGATTTTAAGAAAGGATCTCGTAATTTTAGATCGACAAATGACATCAAAGTTATAA 2256 0.4495 MSKNCFNLKTMTYSSPRQPINLPTDPNLSLTSFLFQSTSSVADTIALADAETGNSLTFRQLKIHVSALSHSLLHLGIRRGDVVLLLAPNSIRFPVCFLAIVAIGAIATTSSPLYTLSELSRQIHDSKPKLVITVSELFKKIEALTLGLPLILLDDPSKKFGARVSSYEDLIRESYNSSDDIPVNRDVSQSDVAAILYSSGTTGRSKGVMLTHQNLIATAVAGAVDQDQNGEGKNVFVCFVPMHHVMGLVGITYTQLRRGNTVVSFGGRFDLEKTFAAVEKFKVTHLYVAPPVMVELIKRREVVIGYELSSLKYLVGGAAPLGKDLMQECTKILPHVHVIQGYGMTEACGLVSIENPKEGSLISVSGSTGTLIPSVESRIINLATLKPLPPNQLGEIWLRGPTIMQGYFNNPEATKLAINDQGWMITGDLGYFDEKGQLFVVDRIKELIKCSGYQVAPAELEDLLVSHPEISDAGVIPSPDAKVGEVPVAFVVRLPNSSITKEDIQKFVAKQVAPYKRLRRVTFLEKIPKLATGKILRKDLGYGMTEACGLISFENPKEGAFLSNSGSTGKLVPSVESQIVSLQTSKSLPPNQLGEIWLRGPVMMQGYFNNPEATKQTINDQGWTLTGDLGYFDEKGQLFVVDRIKELIKCNGYQVAPAELEDLLISHPEISDAGVIPSPDAKAGEVPVAFVVRSLNSLITEEDIKKFVAKEVAPYKRLRRVTFIEKIPKSPTGKILRKDLVILDRQMTSKL* 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2157 751 ProSitePatterns Putative AMP-binding domain signature. 195 206 IPR020845 -
Mtr1g2157 751 CDD 4CL 22 540 - -
Mtr1g2157 751 Gene3D - 446 523 IPR045851 -
Mtr1g2157 751 SUPERFAMILY Acetyl-CoA synthetase-like 26 540 - -
Mtr1g2157 751 Pfam AMP-binding enzyme 41 450 IPR000873 -
Mtr1g2157 751 Pfam AMP-binding enzyme 541 650 IPR000873 -
Mtr1g2157 751 Gene3D - 644 747 IPR045851 -
Mtr1g2157 751 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 541 743 - -
Mtr1g2157 751 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 5 540 - -
Mtr1g2157 751 SUPERFAMILY Acetyl-CoA synthetase-like 541 741 - -
Mtr1g2157 751 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 5 540 - -
Mtr1g2157 751 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 541 743 - -
Mtr1g2157 751 Pfam AMP-binding enzyme C-terminal domain 659 734 IPR025110 -
Mtr1g2157 751 Pfam AMP-binding enzyme C-terminal domain 459 534 IPR025110 -
Mtr1g2157 751 Gene3D - 12 445 IPR042099 -
Mtr1g2157 751 Gene3D Luciferase; Domain 3 565 643 - -
Mtr1g2157 751 Gene3D - 541 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2157 Mtr-Chr1 31676039 31691510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2157 486 751 Monolignol Biosynthesis Gene Families AT4G05160 56.716 1.84e-91 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2157 K01904 - qsu:112025709 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2157 1 31676039 31691510 Mtr1g3344 1 44591453 44594386 ECH
Mtr1g2157 1 31676039 31691510 Mtr1g2157 1 31676039 31691510 ECH