Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2143 ATGCACGGAGGAAATTTGCGTAAGGGGACTTGGCTTCAAGAGGAAGATGAACAATTGATAAGCTTTGTGACCCGTCTTGGGGAACGAAGATGGGATTCACTTGCTAAAGTAGCTGGACTTAGGAGAAGTGGTAAAAGCTGTAGGTTAAGGTGGTTGAACTATCTTCGACCAAATCTCAAACATGGCCCTTTTAATGTTGAAGAGGAGAGACTTATTGTTCAGCTTCAGCAGCAATGGGGTAACAAGTGGTCCAAGATTGCCCGTAGGCTTCCAGGAAGAACAGACAATGAAATCAAGAACTATTGGAGAACTCATTTACAAAAGAGAGTACAAGTTCAACAAGGTGAGTTCATGTATGAAGTAGAAAACCTAGCACGTGATTTCAAAAATAAAAGCATTGATGTGGTTTCCAACAGTGAAGGAGAGACAAAGGAAAGCTCTATAGACAGTTGTCCCTTATCAGATTGGGGAATGAGAAACTCACCTTATCATGAAAGTAGAATATCAGATTGGATAGAAGAATTGCAAAATGGATTTGGTGATAAGGAAATGGAATTAGGACAAGAATTTAATAGTATAAATGGATCAATATATGATTATAATCCCCAGCAAGAATATGATACTTGGGATTATTCAGGTTTTCTGTGGGACTTATGA 657 0.3881 MHGGNLRKGTWLQEEDEQLISFVTRLGERRWDSLAKVAGLRRSGKSCRLRWLNYLRPNLKHGPFNVEEERLIVQLQQQWGNKWSKIARRLPGRTDNEIKNYWRTHLQKRVQVQQGEFMYEVENLARDFKNKSIDVVSNSEGETKESSIDSCPLSDWGMRNSPYHESRISDWIEELQNGFGDKEMELGQEFNSINGSIYDYNPQQEYDTWDYSGFLWDL* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2143 218 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Mtr1g2143 218 PANTHER MYB TRANSCRIPTION FACTOR 2 218 - -
Mtr1g2143 218 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Mtr1g2143 218 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Mtr1g2143 218 Gene3D - 62 135 - -
Mtr1g2143 218 SUPERFAMILY Homeodomain-like 5 102 IPR009057 -
Mtr1g2143 218 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Mtr1g2143 218 CDD SANT 63 106 IPR001005 -
Mtr1g2143 218 Gene3D - 8 60 - -
Mtr1g2143 218 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 218 - -
Mtr1g2143 218 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Mtr1g2143 218 CDD SANT 10 55 IPR001005 -
Mtr1g2143 218 SMART sant 60 108 IPR001005 -
Mtr1g2143 218 SMART sant 7 57 IPR001005 -
Mtr1g2143 218 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2143 Mtr-Chr1 31546801 31548394 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2143 7 111 MYB Transcription Factor Family AT5G59780 63.810 6.50e-47 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr1g2143 Myb_DNA-binding 8.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2143 K09422 - gmx:100783472 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2143 1 31546801 31548394 Mtr1g2143 1 31546801 31548394 ECH