Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2142 ATGTTCCAAACAACCTGCATTTTCCTAATCTCACTACTTTGCTCCTTTTTCAACCATGGAACATCAATGCTTAACCTCACACTCCCTGGTCAACATCCAGACCCTGAATCTGTTGCCTTAGAAGTTCACAGGAAAGTGAATGTTTCAATGTTAAGAAGAGAAATGCTATCAATATCAAACAAAGAGTTTTCAACATCATGTATAACAGGAAACCCAATAGACGATTGTTGGAAATGTGACACAGATTGGGCCAACAATCGTCAAAGGTTAGCAGATTGTGCAATAGGGTTTGGACAAAATGCCAAAGGAGGAAAAGGTGGCAAATTTTACATTGTCACAGATTCCTCAGACAATGATGCTGTGAATCCTAAACCTGGTACTTTAAGATATGCAGTTATACAAAATGAACCACTTTGGATTGTGTTTCCAAGTAACATGATGATTAAGTTGTCTCAAGAGCTTATTTTTAATAGCTTCAAAACCATTGATGGTCGTGGTGCTGATGTTCATATTGTTGGTGGTGGTTGCATCACTCTTCAGTATATAAGTAATGTTATTATACATAACATTCATGTTCATCATTGTCATCCCTCAGGTAACACTAACGTGCGTTCGAGTCCAGAACACTATGGATACAGAACAGAATCAGACGGAGACGGAATCTCAATATTCGGATCAAAAGACATATGGATAGACCATTGCACACTCTCACGTTGCAAAGACGGTTTAATAGACGTCGTTATGGGTTCAACAGCAATAACAATCTCCAACAACCATTTCTCACACCACAATGAGGTTATGTTACTAGGCCACAGTGACCACTACAAACCAGACTCAGCAATGCAAGTAACAATAGCATTCAACCATTTTGGTCAACAATTAGTTCAGAGAATGCCACGTTGCAGGCTCGGATACATCCACGTGGTCAACAATGATTTTACGAGATGGGAGATGTATGCTATTGGTGGAAGCGGGGGACCAACTATTTTTAGTCAAGGTAACCGGTATACGGCTCCTGAGGATGTTGATGCGAAGCAAGTGACGAAGAGGTTGGATTCTGGTGACAGCGAATGGACTTCGTGGAATTGGAAATCTGAAGGCGATGTTATGGCGAATGGTGCTTTTTTTGTTGATTCAGGTGATAAGGGTGAAGGTAGTTTTCAGAAAGCTTATAGTGTTGATCCTAAAGCTGTTGATCGGATTTCTACTCTTACTATGGCTGCTGGTGTTCTTGGTGTTGCTAGGGACAATAATCTAGGAATGTGGACAAGAGCACCAAACGGTGGTGGTGATTATAGTATGTCATATTCTGGAGAAGAAGAGTACACAGATGACATGTCAAAGAGTACAATGTTGTTGACCCATTCTCTTGTAACCCTTTTTGTTCCACTCTTATGTTTCTTGTCCCTAACCATAGATCTTTAA 1425 0.4035 MFQTTCIFLISLLCSFFNHGTSMLNLTLPGQHPDPESVALEVHRKVNVSMLRREMLSISNKEFSTSCITGNPIDDCWKCDTDWANNRQRLADCAIGFGQNAKGGKGGKFYIVTDSSDNDAVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSFKTIDGRGADVHIVGGGCITLQYISNVIIHNIHVHHCHPSGNTNVRSSPEHYGYRTESDGDGISIFGSKDIWIDHCTLSRCKDGLIDVVMGSTAITISNNHFSHHNEVMLLGHSDHYKPDSAMQVTIAFNHFGQQLVQRMPRCRLGYIHVVNNDFTRWEMYAIGGSGGPTIFSQGNRYTAPEDVDAKQVTKRLDSGDSEWTSWNWKSEGDVMANGAFFVDSGDKGEGSFQKAYSVDPKAVDRISTLTMAAGVLGVARDNNLGMWTRAPNGGGDYSMSYSGEEEYTDDMSKSTMLLTHSLVTLFVPLLCFLSLTIDL* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2142 474 PANTHER PECTATE LYASE 1 434 - -
Mtr1g2142 474 Gene3D - 70 412 IPR012334 -
Mtr1g2142 474 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Mtr1g2142 474 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Mtr1g2142 474 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Mtr1g2142 474 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Mtr1g2142 474 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Mtr1g2142 474 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Mtr1g2142 474 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Mtr1g2142 474 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Mtr1g2142 474 SMART amb_all 145 342 IPR002022 -
Mtr1g2142 474 Pfam Pectate lyase 154 334 IPR002022 -
Mtr1g2142 474 PANTHER PECTATE LYASE 18-RELATED 1 434 IPR045032 GO:0030570
Mtr1g2142 474 SUPERFAMILY Pectin lyase-like 71 399 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2142 Mtr-Chr1 31537493 31542340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2142 1 468 Polysaccharide Lyase AT3G53190 68.632 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2142 K01728 - gmx:100815062 775.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2142 1 31537493 31542340 Mtr1g2142 1 31537493 31542340 ECH
Mtr7g3134 7 48308957 48313179 Mtr1g2142 1 31537493 31542340 PCT