Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2136 ATGCAAGTCTTGGAAGATCAAGTCTTGATGGTTTCCAAGGATCATACACAACAAATTATTAAAGGAAAACGAACAAAGCGTCAAAGGCTTCCATCTCCACTTAGGTTAACTATGCCCGTTTCGAATTCTTGCAATGAAGGTACAAGTTATGATAATAACAACAATAATTCAGGAGGAATTGAGTTTGTTAAAATTGATTCGCGTGACCGATCAGAAGAAGAAAAAGAGGAAGAAGAAGATTTGGCGAATTGTCTCATTCTATTAGCTCGAGGTCATAATCATCGTCATGATTATCAAAACACACATGTATCAAATCATCGAGATCACAATAACAACAAATCTTCGAATTTTTATCTTTACGAATGCAAGACTTGCAATCGTTGTTTCCCTTCATTCCAAGCACTTGGTGGACATAGAGCAAGTCATACCAAACCTAACAAGGCAAATTGTAATGTTGCACAACAAAAACAAGCAGTTACAACATCTTCTTTTGTTGATGATCATTATGATCCAACCATGAATACCATACTCTCTTTGCAAGCCTTCGCCGCGACCCCTATTACTACTATTCCTACTACAAAAAAATCAAAAGTTCATGAGTGTTCGATATGTGGTGCCGAATTCTCATCGGGGCAAGCGTTAGGGGGACATATGCGGAGACATAGGAATCTTGTGAACACATCTACAACGACGACAACAACAACGACTTCTATGAGTTTGAGTATTGGTAGTCCTAAATCTCATGAAGCTAAGAAACCTAGAAATGGTTTTAAGTTGGATTTGAATCTTCCAGCTCCAGAAGTTGATCAAAAAGATCAATCCAAGTTTTCGTTTCAGCCTAGAGAAAATGTTATTGCTTTCTCTAATTCTTCTTTGGTGGATTGCCATTACTAA 894 0.3747 MQVLEDQVLMVSKDHTQQIIKGKRTKRQRLPSPLRLTMPVSNSCNEGTSYDNNNNNSGGIEFVKIDSRDRSEEEKEEEEDLANCLILLARGHNHRHDYQNTHVSNHRDHNNNKSSNFYLYECKTCNRCFPSFQALGGHRASHTKPNKANCNVAQQKQAVTTSSFVDDHYDPTMNTILSLQAFAATPITTIPTTKKSKVHECSICGAEFSSGQALGGHMRRHRNLVNTSTTTTTTTTSMSLSIGSPKSHEAKKPRNGFKLDLNLPAPEVDQKDQSKFSFQPRENVIAFSNSSLVDCHY* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2136 297 PANTHER ZINC FINGER PROTEIN ZAT5 11 296 - -
Mtr1g2136 297 MobiDBLite consensus disorder prediction 35 60 - -
Mtr1g2136 297 Gene3D Classic Zinc Finger 182 253 - -
Mtr1g2136 297 Pfam C2H2-type zinc finger 120 144 - -
Mtr1g2136 297 Pfam C2H2-type zinc finger 198 222 - -
Mtr1g2136 297 PANTHER ZINC FINGER, C2H2-LIKE PROTEIN-RELATED 11 296 - -
Mtr1g2136 297 MobiDBLite consensus disorder prediction 225 262 - -
Mtr1g2136 297 SMART c2h2final6 199 221 IPR013087 -
Mtr1g2136 297 SMART c2h2final6 120 142 IPR013087 -
Mtr1g2136 297 ProSitePatterns Zinc finger C2H2 type domain signature. 201 221 IPR013087 -
Mtr1g2136 297 SUPERFAMILY beta-beta-alpha zinc fingers 119 150 IPR036236 -
Mtr1g2136 297 ProSitePatterns Zinc finger C2H2 type domain signature. 122 142 IPR013087 -
Mtr1g2136 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 147 IPR013087 -
Mtr1g2136 297 MobiDBLite consensus disorder prediction 225 244 - -
Mtr1g2136 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 199 221 IPR013087 -
Mtr1g2136 297 SUPERFAMILY beta-beta-alpha zinc fingers 196 223 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2136 Mtr-Chr1 31442516 31443891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2136 8 297 C2H2 Transcription Factor Family AT5G03510 39.610 4.98e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr1g2136 zf-C2H2_6 1.4e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2136 - - mtr:MTR_1g062780 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3335 1 44525566 44527297 Mtr1g2136 1 31442516 31443891 ECH
Mtr1g2136 1 31442516 31443891 Mtr1g3335 1 44525566 44527297 ECH
Mtr1g2136 1 31442516 31443891 Mtr1g2136 1 31442516 31443891 ECH
Mtr2g2814 2 41609954 41611152 Mtr1g2136 1 31442516 31443891 ECH
Mtr4g1656 4 29020799 29022014 Mtr1g2136 1 31442516 31443891 ECH
Mtr1g2136 1 31442516 31443891 Mtr2g2814 2 41609954 41611152 ECH
Mtr1g2136 1 31442516 31443891 Mtr4g1656 4 29020799 29022014 ECH