Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2105 ATGTCAGAACCTTCCACCACCTCTCCTCCACCGCCTACAACCAAAAGCTGGGCCGATCAAGCCGATGAAGAAACCAATCAAACCTCCACCTCCGCCGCCGACGAAACATCTTCCCTCAACGTCAATGAATTAACCATCGACGAAGAAAACAAATCCCTTTCTAAATCTCTAGACGATCCCGACGACTCCAACATTACAGCGGTTACAGCTGGAGACACTCCTTACACATCCGCGACGACCTTCGAAGAATTATCTCTCTCGCCGGAGCTTTTGAAGGGATTATATGTGGAGATGAAGTTTGAAAAACCTAGCAAAATTCAAGCTAAGAGTTTGCCCATGATTCTTAATCCTCCACATAGGGATTTGATTGCTCAAGCACATAATGGTTCTGGAAAAACTACTTGTTTTAATCTTGGGATGCTTAGTAGGGTTGATCCCAATTTGCAAGCTCCTCAAGCTCTATGTATTTGTCCTACTAGAGAGTTGGCTATTCAGAACATTGAGGTTCTCCGTAAGATGGGGAAGTACACGGGGATTAGCTCAGAATGTGCAGTTCCTATGGACAGAAGAGATTCAATTCCGGTAATGAAAAGGGCGCCTATTATGGCTCAGGTTGTTATTGGTACTCCTGGCACAATGAAGAATTTGATTACTTATAAGAAACTTGGAGTGACAAAATTGAAGATTCTCGTTTTTGACGAGGCGGATCAAATGCTTGCTGAGGATGGATTTAGAGATGATTCTCTGAGAATAATAAAAGAAATAGAGAAATTCAATTCAAGCTGTCAGGTTCTTCTGTTTTCTGCTACATTTAATGAAACTGTCAAGAATTTTGCTACAAGGGTTGTTGGGAAAAAGGAGCATAATGAACTTTTTGTGAAGAAAGAGGAGCTATCTTTAGATGCAGTAAAACAGTACAAAGTTCTTGTTCCTGATGAGCTTGTTAAAATTGACGTGATTAAAAATTATATATTTGAACTAGGAGAGAATGTGGGGCAAACTATTATATTTGTGCGCACTAGAAATAGTGCAAAAATGTTGCACAAAGCTCTTGTTGATTTAGGCTATGAGGTCACTTCCATACAAGGTGCTCTTGACCATGTTGATAGAGACAAAATCGTCAAAGAGTTCAAAGATGGTTTGACTCAGGTTCTTATATCGACTGATGTTCTTGCCCGTGGCTTTGATCAGCAACAGGTTAATTTGGTTATAAACTATGATCTTCCACTGAAGTACGCTGCTGAGTACACCCATGGCCATGAACAAGAGCCTGATTATGAGGTGTATTTGCACAGGGTTGGTAGGGCTGGGCGATTTGGGCGCAAGGGGGCTGTATTTAACCTGATATGTGGTGAAAGGGATGAAAAGACCTTGTCAAAGATTGAAAAACATTTTGGCACCTATATAAAAGAGGTGAAAGACAGAAGTGTTGAAGATTATAAAGTTGCTCTTAAAGAAGCTGGTTTACTGTTTTGA 1476 0.4079 MSEPSTTSPPPPTTKSWADQADEETNQTSTSAADETSSLNVNELTIDEENKSLSKSLDDPDDSNITAVTAGDTPYTSATTFEELSLSPELLKGLYVEMKFEKPSKIQAKSLPMILNPPHRDLIAQAHNGSGKTTCFNLGMLSRVDPNLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDRRDSIPVMKRAPIMAQVVIGTPGTMKNLITYKKLGVTKLKILVFDEADQMLAEDGFRDDSLRIIKEIEKFNSSCQVLLFSATFNETVKNFATRVVGKKEHNELFVKKEELSLDAVKQYKVLVPDELVKIDVIKNYIFELGENVGQTIIFVRTRNSAKMLHKALVDLGYEVTSIQGALDHVDRDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLVINYDLPLKYAAEYTHGHEQEPDYEVYLHRVGRAGRFGRKGAVFNLICGERDEKTLSKIEKHFGTYIKEVKDRSVEDYKVALKEAGLLF* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2105 491 Pfam Helicase conserved C-terminal domain 316 440 IPR001650 -
Mtr1g2105 491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 454 IPR027417 -
Mtr1g2105 491 PANTHER DEAD-BOX HELICASE DBP80 58 470 - -
Mtr1g2105 491 SMART helicmild6 345 440 IPR001650 -
Mtr1g2105 491 Gene3D - 59 297 IPR027417 -
Mtr1g2105 491 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 58 470 - -
Mtr1g2105 491 CDD DEADc_DDX19_DDX25 86 283 - -
Mtr1g2105 491 CDD SF2_C_DEAD 303 449 - -
Mtr1g2105 491 Pfam DEAD/DEAH box helicase 105 277 IPR011545 GO:0003676|GO:0005524
Mtr1g2105 491 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 113 289 IPR014001 -
Mtr1g2105 491 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 319 481 IPR001650 -
Mtr1g2105 491 Gene3D - 298 481 IPR027417 -
Mtr1g2105 491 SMART ultradead3 99 306 IPR014001 -
Mtr1g2105 491 MobiDBLite consensus disorder prediction 12 47 - -
Mtr1g2105 491 MobiDBLite consensus disorder prediction 1 71 - -
Mtr1g2105 491 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 79 108 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2105 Mtr-Chr1 31011683 31018612 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2105 80 472 Eukaryotic Initiation Factors Gene Family AT1G72730 36.432 2.68e-70 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2105 K18655 - gmx:100778091 739.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2105 1 31011683 31018612 Mtr1g2105 1 31011683 31018612 ECH