Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2102 ATGACGGATTCCGAGAAAGACGCAGTGCCAGCTTCACCGGCGGCGACACTTTACGTCGGCGATCTTCACTCCGACGTAACCGACGCTCAACTCTACAAGGCGTTTTCTGAATTCAACACCCTCATTTCCGCTCGCGTCTGTAAAGACTCCGCCACCGGGAAATCACTCTGTTATGGTTACGTCAACCTCTCCTCTCATCAAGAAGCAATTCGTGCAATCGAGTTGAAGAATCATTCTTCCCTCAATGGAAAAGTGATAAGGGTCATGTGGTTAAGTCGTGATGCTGATGCAAGGAAGAGTGGCAAAGGGAATGTGTTTGTTAAGAACTTAGCAGCATCCATAGATAATGTGGGACTACATGATTTATTTCAAAAATATGGGAACATTTTGTCCAGCAAAATTGCCAGGTCTGAGGATGGGAAGAGCAAAGGGTTTGGTTATATCCAGTTTGATTCAGAGGAGTCTGCAAATGTGGCTATCCAGAAAATGAATGGCTCTACTGTGAGAGATAAGCAGATATATGTTGGGAAATTTATCAGAAAAAGTGAGCGCTCTCTTCCTGACCTGGATGCCAAATTTACAAACTTGTACGTTAAGAATTTGGACCCAGTTGTTACTGAAAAGCATCTTGGAGAAAAGTTCTCCTCTTTTGGAAAAATTGTTAGCTTGGCTATTAAAAAGGATGAGAATGGGCAGTCAAAAGGCTTCGGATTTGTTAACTATGACAGCCCAGATGATGCTAGACGAGCAATGGAAGCAATGGATGGATCACAGTTTGGTTCAAAGATCTTGTATGTTGCAAGAGCACAAAAAAAGGTTGAACGTGAGCAGATATTGCATCATTTGTTTGTGGAAAAAGGCTTGAAACACATGGGATCAAACATTTATGTGAAGAACATTGATACCAGTGTTGGCGATGAAGAACTACGGGACCATTTTAGTGCATGTGGCGAAGTCTTGTCTGCAAAAGTTATGCGAGATGACAAAGGGACAAGCAAGGGGTTTGGTTTTGTCTGTTTTTCTACCGTGGTGGAGGCCTTTAAGTCTATGAGCTGTTTTAATGGGTGCATGTTCCATGGCAAACCACTGTATGTTGATTTTGCTCAGAAGAAAGAGGATAGGAAAAGACTATTGCAGCACATGCATGCTCCGAAACTAGAAGGATTAGCAGGACATTCTTCTACTGCTGTTATCCCTGGTGCACGTCCTCCTCCTTTCATCTACAGAACTTCTGGTGTTGTTTATCACCCTCCTCTGGGATCAGGATGGAGTGCTAATGGCTTTGCATCACCTTCTATAGGATTACAACAATCAAAAGCTTCTATTATTTCCAACTTCGGTAAGCCGCACATGATAATCCTGGGTGAGACAAAAGATAATACAAATTCAAAAGAGTCGATTACTCACTCAGGACAGGCCAAGAACGTGGCCAGTGGATGCCAGCAGGAGACGCAAGGAAAATCTGGAATTTCATCTGCTATGCAGGCTCTTGATCTTCAGAAGACCAAAGTTTCTGGCCAGGATGTGCTTCATTCAAATTCTACTTCAGCTGGGGTTGCTGTCATTTGA 1569 0.4321 MTDSEKDAVPASPAATLYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAIELKNHSSLNGKVIRVMWLSRDADARKSGKGNVFVKNLAASIDNVGLHDLFQKYGNILSSKIARSEDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVGKFIRKSERSLPDLDAKFTNLYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDENGQSKGFGFVNYDSPDDARRAMEAMDGSQFGSKILYVARAQKKVEREQILHHLFVEKGLKHMGSNIYVKNIDTSVGDEELRDHFSACGEVLSAKVMRDDKGTSKGFGFVCFSTVVEAFKSMSCFNGCMFHGKPLYVDFAQKKEDRKRLLQHMHAPKLEGLAGHSSTAVIPGARPPPFIYRTSGVVYHPPLGSGWSANGFASPSIGLQQSKASIISNFGKPHMIILGETKDNTNSKESITHSGQAKNVASGCQQETQGKSGISSAMQALDLQKTKVSGQDVLHSNSTSAGVAVI* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2102 522 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 271 IPR000504 GO:0003723
Mtr1g2102 522 Gene3D - 2 103 IPR012677 -
Mtr1g2102 522 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 180 IPR000504 GO:0003723
Mtr1g2102 522 Gene3D - 185 280 IPR012677 -
Mtr1g2102 522 Gene3D - 285 378 IPR012677 -
Mtr1g2102 522 SUPERFAMILY RNA-binding domain, RBD 14 183 IPR035979 GO:0003676
Mtr1g2102 522 SUPERFAMILY RNA-binding domain, RBD 187 277 IPR035979 GO:0003676
Mtr1g2102 522 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 15 395 IPR006515 GO:0003723
Mtr1g2102 522 MobiDBLite consensus disorder prediction 461 489 - -
Mtr1g2102 522 PANTHER POLYADENYLATE-BINDING PROTEIN 9 474 - -
Mtr1g2102 522 SMART rrm1_1 294 366 IPR000504 GO:0003723
Mtr1g2102 522 SMART rrm1_1 104 176 IPR000504 GO:0003723
Mtr1g2102 522 SMART rrm1_1 16 89 IPR000504 GO:0003723
Mtr1g2102 522 SMART rrm1_1 195 267 IPR000504 GO:0003723
Mtr1g2102 522 CDD RRM2_I_PABPs 101 177 IPR045305 -
Mtr1g2102 522 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 93 IPR000504 GO:0003723
Mtr1g2102 522 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 370 IPR000504 GO:0003723
Mtr1g2102 522 SUPERFAMILY RNA-binding domain, RBD 293 378 IPR035979 GO:0003676
Mtr1g2102 522 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 173 IPR000504 GO:0003723
Mtr1g2102 522 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 363 IPR000504 GO:0003723
Mtr1g2102 522 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 87 IPR000504 GO:0003723
Mtr1g2102 522 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 263 IPR000504 GO:0003723
Mtr1g2102 522 PANTHER RNA BINDING PROTEIN 9 474 - -
Mtr1g2102 522 Gene3D - 104 184 IPR012677 -
Mtr1g2102 522 CDD RRM1_I_PABPs 17 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2102 Mtr-Chr1 30967748 30971600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2102 15 430 Eukaryotic Initiation Factors Gene Family AT2G36660 55.792 2.54e-159 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2102 K13126 - gmx:100779547 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2102 1 30967748 30971600 Mtr1g2102 1 30967748 30971600 ECH
Mtr7g3161 7 48598007 48602547 Mtr1g2102 1 30967748 30971600 PCT