Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2091 ATGGAATGGAATGGAAACACAAGAAGTTTTGTTCCTCAACCAGAGTCTTCCTTAAGCTTCCTCTACAACTACAACCAATGCTCATATCAAGGAATGATGGAAGTGAAACATCAAGACTGGACAGATACAATGTTCCCAGAAATGGAAAAAATGATGAAGTATGGGAATCAGGAAAAGAAAAAGCGATTAACGAGTGAACAGATGGAATCACTGGAGAGTAGTTTTCAAGAGGAGATCAAACTAGACCCTCAAAGGAAGATGAAGCTTTCCAAGGAGTTAGGGCTACAGCCTCGTCAAATTGCTATTTGGTTCCAAAATAGACGTGCTAGGTGGAAGACCAAGCAACTTGAACACTTATATGATTCACTTAGACACCAATTTGAGGTTGTGTCTAAGGAAAAACAGCAGCTTCAGGATGAGGTTATGAAGTTGAAGGCTATGTTGAAAGAACAAGGTAACTCTTGTGGTAGAATGCAAGGTTACTATACAGAAATGTCAGTGGAAGAAACAGAAACAGTAGAAAGCACATCAGAAGCAGCTCTACGTTGCTCCAACAGAGAGGTGAAGGGAAAGATTCATCAACAGTTGAACATTGATGAAGGAAACTGTAGTTTCAATTTAGAGGACTATAACATTAATAACAATGTTCCACTATTGCCCTACTGGCCTGCTGCTGTACCTTATAACTATCACCCTTAA 699 0.3963 MEWNGNTRSFVPQPESSLSFLYNYNQCSYQGMMEVKHQDWTDTMFPEMEKMMKYGNQEKKKRLTSEQMESLESSFQEEIKLDPQRKMKLSKELGLQPRQIAIWFQNRRARWKTKQLEHLYDSLRHQFEVVSKEKQQLQDEVMKLKAMLKEQGNSCGRMQGYYTEMSVEETETVESTSEAALRCSNREVKGKIHQQLNIDEGNCSFNLEDYNINNNVPLLPYWPAAVPYNYHP* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2091 232 Gene3D - 50 122 - -
Mtr1g2091 232 Coils Coil 120 154 - -
Mtr1g2091 232 ProSitePatterns 'Homeobox' domain signature. 89 112 IPR017970 GO:0000981|GO:0006355
Mtr1g2091 232 PRINTS Lambda-repressor HTH signature 85 94 IPR000047 GO:0003677
Mtr1g2091 232 PRINTS Lambda-repressor HTH signature 94 110 IPR000047 GO:0003677
Mtr1g2091 232 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 223 - -
Mtr1g2091 232 CDD homeodomain 59 115 IPR001356 GO:0003677
Mtr1g2091 232 Pfam Homeobox associated leucine zipper 114 148 IPR003106 GO:0006355|GO:0043565
Mtr1g2091 232 SMART HOX_1 57 118 IPR001356 GO:0003677
Mtr1g2091 232 SUPERFAMILY Homeodomain-like 44 116 IPR009057 -
Mtr1g2091 232 ProSiteProfiles 'Homeobox' domain profile. 54 114 IPR001356 GO:0003677
Mtr1g2091 232 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 223 IPR045224 GO:0003700
Mtr1g2091 232 Pfam Homeodomain 59 112 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2091 Mtr-Chr1 30873854 30876358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2091 1 144 Homeobox Transcription Factor Family AT5G03790 53.704 1.92e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr1g2091 Homeodomain 6.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2091 - - gmx:100778007 281.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2091 1 30873854 30876358 Mtr1g2091 1 30873854 30876358 ECH
Mtr1g2091 1 30873854 30876358 Mtr7g3176 7 48740583 48743016 PCT