Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2088 ATGGCTTCTTGCGACGATGACGACGATTTCTCTCTCCTTCACGACGATAACAACCACCACTCTCACCACCACCACCTCCACCAAACCTTCGCACCTCACCACCACCACAACCACCACTCTCACCACCACTTCTCCACAGCTTCAGTCCAATCCAAACACATCACCACCTCCGTCTCCGCCGCCGTCGCCGACGACGACGGAGACGACACCGATGACTACGGTAATCCGTTCGACGATGACGCTGGTAGCGAGAAACGTAAAGATCGAGATCGAGATGAGATCTGCGATGCAACTACGTCGTATGGATTCAACAACAAACGGTCAAAACCGGTTTCTAGCGGTAACGGTGGAGGAAGTGCCGGAGTAGGAGCAGAGTATAGAAAGGATCGAGAAGAATGGAGTGATACAGCGATAGTGTGTTTACTCGAAGCGTATACAGAGAAATTTACGCAGCTGAATCGAGGGAATCTAAGAGGAAGAGATTGGGAAGAAGTAGCTTCAATGGTGAGTGAACGGTGTGAGAATCAATCAAAGAGTGTGGAACAGTGTAAGAACAAGGTTGATAATTTGAAGAAAAGGTATAAGCTAGAGAGACATAGAATGAATAATGGTTGTATTTCTGCTAGTCATTGGCCTTGGTTTAAGCAGATGGAACATATTGTTGGGAATTCGCTTCCGGCCAAGTTTGCGGATGATGATAAAGCTATTGTTCCTGCTTCAATTTCACCTAGGCAATCTAAGAGATATGGAGTGGCTACGTCCAGCAGTGGAGGTCAAGTAAACAGCCTGAAGTCCAAAGCATTGTCAAACCTTAGATGGCGGAGAGTTGTTCTAAAAATCAGCGGATCGGCACTTACCGGATCCGATACCTGCAATATTGACCCTAAGGTGGCCATGTTAGTTTCAAATGAAGTTGCAATAGCTTCCCGTCTTGGTGTGGAGGTAGCAATTGTTGTTGGAGGTCGTAATTTCTTCTGTGGAGATGCATGGGTAACTGCAACTGGTTTAGAAAGATGCACTGCATACCAAGTTGGCATGATGGCAACTGTGATGAACTCCTTACTGCTTCAATCAACTTTAGAGAAGATGGGTGTTCAGACTCGTGTACAAACTTCAGTTTCAATGCAGGCGTTTGCTGAACCATACAATAGGCAACGGGCCATCAGGCATCTTGAGAAAGGAAGAGTTGTTATATTTGGTGGCATTGGTTTTGGTGCTGGCAATCCACTTTTCTCAACTGACATATCTGCTGCTCTTCGGGCTTCAGAGATTAATGCTCAGGCTGTCCTCAAAGGTACTAACGTAGATGGTGTATATGACTGCAACTCACGAGACAACAATTTCACTTTCGAGCACATATCCTTCAGGGAGCTAGTGTCTAGAGGTGTCACCTCTATGGATATGTCAGCCCTGACATTCTGCGAGGAGAATGCCATTCCTGTTGTAGTTTTTAATCTATTGGCACCCGGGAACATTTCAAAAGCTTTGTGTGGAGAACAAGTTGGCACACTTATTGACCAAACTGGAGCAATAAGCTAA 1539 0.4594 MASCDDDDDFSLLHDDNNHHSHHHHLHQTFAPHHHHNHHSHHHFSTASVQSKHITTSVSAAVADDDGDDTDDYGNPFDDDAGSEKRKDRDRDEICDATTSYGFNNKRSKPVSSGNGGGSAGVGAEYRKDREEWSDTAIVCLLEAYTEKFTQLNRGNLRGRDWEEVASMVSERCENQSKSVEQCKNKVDNLKKRYKLERHRMNNGCISASHWPWFKQMEHIVGNSLPAKFADDDKAIVPASISPRQSKRYGVATSSSGGQVNSLKSKALSNLRWRRVVLKISGSALTGSDTCNIDPKVAMLVSNEVAIASRLGVEVAIVVGGRNFFCGDAWVTATGLERCTAYQVGMMATVMNSLLLQSTLEKMGVQTRVQTSVSMQAFAEPYNRQRAIRHLEKGRVVIFGGIGFGAGNPLFSTDISAALRASEINAQAVLKGTNVDGVYDCNSRDNNFTFEHISFRELVSRGVTSMDMSALTFCEENAIPVVVFNLLAPGNISKALCGEQVGTLIDQTGAIS* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2088 512 Coils Coil 173 200 - -
Mtr1g2088 512 MobiDBLite consensus disorder prediction 20 46 - -
Mtr1g2088 512 MobiDBLite consensus disorder prediction 19 123 - -
Mtr1g2088 512 MobiDBLite consensus disorder prediction 98 115 - -
Mtr1g2088 512 PANTHER URIDYLATE KINASE 1 512 - -
Mtr1g2088 512 Pfam Amino acid kinase family 275 485 IPR001048 -
Mtr1g2088 512 CDD AAK_UMPK-PyrH-Ec 274 506 IPR015963 GO:0005737|GO:0006221|GO:0033862
Mtr1g2088 512 MobiDBLite consensus disorder prediction 78 96 - -
Mtr1g2088 512 PANTHER ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN 1 512 IPR011817 GO:0006221|GO:0009041
Mtr1g2088 512 SUPERFAMILY Carbamate kinase-like 272 505 IPR036393 -
Mtr1g2088 512 Gene3D - 133 196 - -
Mtr1g2088 512 Pfam Myb/SANT-like DNA-binding domain 130 220 IPR044822 -
Mtr1g2088 512 Gene3D - 264 511 IPR036393 -
Mtr1g2088 512 Hamap Uridylate kinase [pyrH]. 271 506 IPR015963 GO:0005737|GO:0006221|GO:0033862
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2088 Mtr-Chr1 30833737 30838644 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2088 112 224 Trihelix Transcription Factor Family AT3G14180 37.607 1.12e-16 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Mtr1g2088 AA_kinase 8.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2088 - - gmx:100805176 781.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2088 1 30833737 30838644 Mtr1g2088 1 30833737 30838644 ECH