Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2083 ATGGAACAAACCATGCACAACAACAATGTTTCAGTTGGGTCACCACAACAACTAGTAACAACAAACACATTACCTCAAGAAATGAACATGAACATAAGTGTTGGAAACAGTATTGTAACTACTATTGGAACATCAATAGTTGCTTTAGAAGCACCAACAGTCACACCAACAACAACAACACCAGGAAGTTTGGATTTGTTTGGTAAGAAAAAGAGAGGTAGACCAAGAAAATATGATGCTGATGGAAACCTAAATCCAAGTTACAAGAAGATTGTTAAAACAACAACACCAATACTAACATCACCACCAGGATTCACTTTGTCTACAAATGAGTTTGCTTCCAAAAAGGGTCGTGGTAAATCAACTGGGTTTGTTAATTACCAAACCTTTTCTTCTTTTGGTGAGGTGTTTCCAAGCACAGCTGCTGTGGATTTTGCACCACATGTAGTCACAGTTTATGCAGGAGAGGATGTTGGTGGAAAGATCTTGTCATTTGCACAGAAGAGTCCAAGAGGAATATGCATTCTTTCTGCCAATGGAGCAATCTCTAAAGTTGCACTAGGTCAACCTGGTTCTACTGGTGGTAGCATTTTGACTTATGAGGGACGGTTTGAGATTCTATCTTTGTCTGGATCTTACACGGCTTCCGACAATAGTGGCATAAGAACTCGAGAGGGTGGATTGAGTGTCTCGCTAGCTGGTCCGGACGGTCGAGTAATCGGAGGTGCTGTTGCTGGTGTTCTTATAGCTGCTGGCCCCATACAAATTGTAGTGGGGAGCTTCATGTCAAATGGTAACAACAGCAAGCCTCTTAAAAGGAAGTACCAACGCGAACAAACAGTGGCTTCTCCAACTTCAACTGGTCCAGAAATAGTCACTGCAGCAAGACCTATCTCACAAGCAAATATTCATGGTGAAAACTTTATGATACCTATCATGTCTCATCAGCTTCCTGATCAAATCCAGAGAGAATCTATCAATGTTTCAAGTGATAAACTGAACTTAGATGCCACTCCTGATGATGATACTTGGAACAGTTCTGATGAATATTCAGATCAAAGGACATCCCCTGACATCAATATTTCTTTGCCTGATGAATAG 1101 0.4096 MEQTMHNNNVSVGSPQQLVTTNTLPQEMNMNISVGNSIVTTIGTSIVALEAPTVTPTTTTPGSLDLFGKKKRGRPRKYDADGNLNPSYKKIVKTTTPILTSPPGFTLSTNEFASKKGRGKSTGFVNYQTFSSFGEVFPSTAAVDFAPHVVTVYAGEDVGGKILSFAQKSPRGICILSANGAISKVALGQPGSTGGSILTYEGRFEILSLSGSYTASDNSGIRTREGGLSVSLAGPDGRVIGGAVAGVLIAAGPIQIVVGSFMSNGNNSKPLKRKYQREQTVASPTSTGPEIVTAARPISQANIHGENFMIPIMSHQLPDQIQRESINVSSDKLNLDATPDDDTWNSSDEYSDQRTSPDINISLPDE* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2083 366 CDD DUF296 147 261 IPR005175 -
Mtr1g2083 366 SUPERFAMILY AF0104/ALDC/Ptd012-like 145 265 - -
Mtr1g2083 366 ProSiteProfiles PPC domain profile profile. 142 287 IPR005175 -
Mtr1g2083 366 MobiDBLite consensus disorder prediction 329 366 - -
Mtr1g2083 366 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 7 365 - -
Mtr1g2083 366 MobiDBLite consensus disorder prediction 267 289 - -
Mtr1g2083 366 MobiDBLite consensus disorder prediction 60 84 - -
Mtr1g2083 366 Pfam Plants and Prokaryotes Conserved (PCC) domain 147 261 IPR005175 -
Mtr1g2083 366 Gene3D - 147 283 - -
Mtr1g2083 366 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 7 365 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2083 Mtr-Chr1 30787619 30792075 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2083 69 304 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 46.914 7.61e-62 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2083 - - gmx:100779227 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2083 1 30787619 30792075 Mtr1g2083 1 30787619 30792075 ECH