Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2074 ATGAATCCAAATGATGAAAAAAACTCTCCCAAATTTTCTTCTTCATCTTTGATGGAATATGAAGCATCAGCTATAGGTGGTGGTGGTAGTGGTAGTAGTGATGTTCCTGTGCCTATGGAGTGTTTGCAGATGAGCCCAGTTCCACCATTTCTTTCAAAAACATTTGATTTGGTTGATGACCCTTCATTGAATCCAATCATATCATGGAGTTCCAATGGTGGTAGCTTTGTTGTTTGGGATCCTTTGGAGTTTGCAAGAATTATCTTGCCTAGACACTTCAAACACAACAATTTCTCCAGTTTTGTTCGTCAGCTTAATACTTATGGATTCCGCAAGATTGACACCGACAAATGGGAGTTTTTTAATGAAGGTTTTCAGAAAGGTAAGAAGCACTTACTGAAGAGCATTCAAAGGCGCCGCACGTCTCAATCTCAGCAAGTTTGTAACTATGTTGGATCTTCTTCTGATGCAGGGAAATCTGGAGTCGAGGTTGAGATTGAAAGATTGAGGAAGGAGAGGACTGTGTTAATGCAAGAAGTGGTTGATTTACAGCAACAACAACGAATGACGGCTAGTCACGCAGGTAATGTGAATCAAAGGCTTCAATCTGCTGAACAAAGACAGAAACAAATGGTATCTTTCTTGGCCAAGTTGTTTTCAAATCCGGAATTTTTAGCGCGACTTAAGCAGAAGAAGGAACAGAAAGATATAGAATCTCCAAGAGTTAGAAGAAAATTTATTAAGCAAAACCAAAATGAAGAAGAAAATCTCAAAGATGGAAAGATAGTGAGGTACCAACCCAATTGGGGAAATATGAACATGTCTTGTGAAACTCAAGAACTTAGTCCAGTTTCCATTGAAAACTCTCCTCACTATCTTTCACATGATCTAGCTAAAGAAATGAGTACAGGTGAAGAAGATTTTACTTCTCAAATTGAGAATATTTCATCAGATGAATATGCTGGAATGCATGGAATTTTCATGTCAAATTCAGAAACTAATATTATTGAAGAAGGATCATCTAGTTTTGGACTTGATGAACCCCTTTTCAAAGGAAAAAATGTTATTAGTCCAAATGAGGAAGTTATTCCTGAGAATTTTGAAGGGTTTCAATCTATTGGGACTGAAAGTATCATCAAGCAAGAAGATATATGGGACCCTAGCTTCAATGTTGATGCTGGTGCTACTTCAAACTGTGGGAATGAGATGTGGGATCCTATGAATTATGGAATATCTGACTTTGGAGTTGTTACAAGTGGTGACATGTCAGATATGTGGGATATTGGTTTTGGAAGTTTGGGTATTGATAGGTGGCCAGCTGATGAATGTCCTTTTGATAAAATAGATAGTCAAGGTGGTAAGCATGATAGACCTACCTAA 1380 0.3783 MNPNDEKNSPKFSSSSLMEYEASAIGGGGSGSSDVPVPMECLQMSPVPPFLSKTFDLVDDPSLNPIISWSSNGGSFVVWDPLEFARIILPRHFKHNNFSSFVRQLNTYGFRKIDTDKWEFFNEGFQKGKKHLLKSIQRRRTSQSQQVCNYVGSSSDAGKSGVEVEIERLRKERTVLMQEVVDLQQQQRMTASHAGNVNQRLQSAEQRQKQMVSFLAKLFSNPEFLARLKQKKEQKDIESPRVRRKFIKQNQNEEENLKDGKIVRYQPNWGNMNMSCETQELSPVSIENSPHYLSHDLAKEMSTGEEDFTSQIENISSDEYAGMHGIFMSNSETNIIEEGSSSFGLDEPLFKGKNVISPNEEVIPENFEGFQSIGTESIIKQEDIWDPSFNVDAGATSNCGNEMWDPMNYGISDFGVVTSGDMSDMWDIGFGSLGIDRWPADECPFDKIDSQGGKHDRPT* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2074 459 Coils Coil 159 186 - -
Mtr1g2074 459 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-3 39 454 - -
Mtr1g2074 459 SUPERFAMILY "Winged helix" DNA-binding domain 46 139 IPR036390 -
Mtr1g2074 459 ProSitePatterns HSF-type DNA-binding domain signature. 89 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr1g2074 459 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 39 454 IPR027725 -
Mtr1g2074 459 SMART hsfneu3 46 139 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr1g2074 459 PRINTS Heat shock factor (HSF) domain signature 50 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr1g2074 459 PRINTS Heat shock factor (HSF) domain signature 88 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr1g2074 459 PRINTS Heat shock factor (HSF) domain signature 101 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr1g2074 459 Pfam HSF-type DNA-binding 50 139 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr1g2074 459 Gene3D - 42 140 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2074 Mtr-Chr1 30638413 30641364 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2074 29 280 HSF AT5G03720 59.375 1.20e-100 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mtr1g2074 HSF_DNA-bind 9.4e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2074 K09419 - gmx:100780835 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2074 1 30638413 30641364 Mtr1g2074 1 30638413 30641364 ECH