Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2071 ATGGAGAAACCACGAAGACCATTTGATAGATCAAAAGAACCAATTTTAAAGAGACCCAGATTGATAGAAAATCCAGATCGTGCTCCAAATTCGAGTGTTCGACCAATTCAACAAAGAAAACAAGTGAATTCTGGGATTTCAACGTTGTCTTCTGCTTCACGGTTCAGGCAGAATGATAGAGAGTTGGAAAGTAGTGATTTTGATGGTGGTGGTTATGAGCCGCAGCCGATTCGGTTTGAGGACCTGGTGGCTCAGTATAAGAGTGCACTTGCAGAGCTTACTTTCAATTCGAAGCCGATGATTACCAACTTGACTATAATTGCAGGGGAGAATCAAGCTGGTCAGAAGGCTATTGCTGCCACTATTTGTGCTAACATTCTAGAGGTTCCTAGTGAACAAAAGCTGCCATCTCTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCAGGATTACATAAAATACTTCGCTGCCAAACTACCCGAGGTATTTTGCAAGGCATACAAACAGGTAGATCCTTCTGTCCGTCAAAGTATGAAACATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGACCCTTCAGATTATTGACAAGGAACTGGGCTTCACTCCAGTAATCAATGGTTCATCTTCTGCATCTACTGCACTCAGGAGTGATTCACAGTCAAAGCATTCGCCTCACAGTATCCATGTGAATCCCAAGTATTTTGAAAGACAGCGTCTTCAGCAGTCCAGCAGGACTAAAGGAGTTGTTGGTGACATGACTGGAGCTATTGCAAACTCAAATGACGACCATGAGATGACTGATAGAGATTTGGGTGTTGCACGAGCATGGAATAATCAGCGCACTCATAGAGATCCATTCAATGATTCAGTTCCAGAAAAGAGCATCAGTGCATCATATGAAGACAATGAACATGGTTCCAATCTTTCAAGGAATTTGGGCATGGGTATTGGAAGAACTGATGGTAGGGTTGCCAAGTTAGGACACAGAAATTTGTCCAGCAAAGCTGCTGCTGGTGTTTCAGGGACCATATCTGGGCAAAGAAATAGTGTTGGCCTCAAACATAGTTTTTCAAATACTGAAGCATCTATGCATCAGCCAATACGAAACATAGCTGGAATACAGAGAAATGTGATATCAAGTAGCTGGCAAAATTCTGAGGAAGAGGAGTACTCGTGGGATGAAATGAACACGGGATTGACCGGTCATGGTGTCCGTAACAACTTGGGCAATGATGCTTGGACCGCTGATGATGAGAATTTGGAAGCTGAAGATAACCACCACCAAATCAGAAATGTTTTTAGGGCAAATGTTGATAGAGAAATGCCCAATAGATCTCAAGCCACTGAAAAGAAACAATCACATGCATTTCAGCATCATCCATCATTATCATGGCAATTGCAGGAGCAGCAATCAATTGATGCGTTGGATAGGAAACCGGGTCACTTGGAAGGATCTATGTTAATGTCTGGTTCCTTACCAGCCAATGCAAGTTCTTCTGCTGCCAGGATGGGGAATCGTGCTTTCCTTCCAAATGCAAGAATAGGATTGGCAGAAATTGAGGGACAACAATTTCATTCTGTGGGATCTGAATCCCCTTCCGGGCAGTCACCTTTGCGACATCGGTCTCCATCGCCACCAAGTATTGACCACTCCCATCTTATGAAAAGTTTGGCTATGCAAGACCATCCCCACACTCGTAAAACATCTCATTTTTTGGGAGGTCTGCACAGTCAATATAATGAAGATTCTTCTCCCACCCTTGCTCCTAATATTCATGTTGGAGACTTGCGAAGATCATCGCAACTAAAAGACTTGCAGGGTCCATTACCTTCATCAGGTTTTCAGCCAAGGTATCAGCAACAACTGAGCTCTTCACACGCTGAAGTAACTATTGAGACTGAGAAGCCACCTTTGTCCAAAGTTTCTCTAGCCAGAAAAACCTCAGAGCAGCCAGCCACAAGTCATACAAAAGCTGCAAGTGTGAAGAATGGAACATTTTCCAACATGCCAACTACTAGTAGTCTTCCATCTCTATTAGGGGCTCGGCCTTCTCAGTCAGGTGGTTCTTCCCATGCCAAAATAATTTCATCAGTGTCCGTAAATGTCTCTCCATCTTCACCTGTTTTGCCGAAAAGACCTCAAAGAAAGGCTGGACAACCACTACGGACATCTACTCTATCACCAGCTTCCTCGAATGTTAGCAGTGCCTCAGCCCAGTCATCGGGTGCCACCAATCATACCTCAAATCCACTTGCAAACCTTTTAAGCTCATTAGTTGCAAAGGGTTTGATATCCACAGTAACTGAGACACCAGCCGAGGTGCCGCCTGAGACGCTGACTCGATTGGAAGATCACTGCGACAGCTTTAGTACCAGTAGCTCTATGCCTGTTGCTTCATTGTCTGGTTCTGCAGCTGTCCCTATCCCTTCTACCAAAGATGAGTTAGATGATACTGCGAAAACACCTATGTCGTTATCTGAATCAACCAGCACAGATATTAGAAATGTCATTGGTTTTGAGTTTAAGCCTAATGTAATCAGGAAGTTGCATCCATCTGTAATTAGTGGATTATTTGATGATTTTCCACATCATTGCAGCATTTGTGGCCTTAAACTTAAATTCCAAGAACAGTTTAACAGACACTTAGAGTGGCATGCCACAAGAGAAAGAGAATGCACTGGTTTAATTACGGCATCAAGATGGTATCTGAAGTCAAGTGACTGGGTTGCTGGCAAAGCTGAATGTCCATCTGAGAATGAGTTTACTGATTCTTTAGATTCACAAGACAGCGAAACAGACAAAGATCAAGAGGATGCAATGGTTCTAGCAGATGAAAACCAATGCTTGTGTGTGTTGTGTGGTGAGCTATTTGAAGATGTTTACTGTCATGAAAATAGTGAATGGATGTTCAAAGCGGCTGTTTACATGACTAATGCTGATATCGCTACTGAGGTGGGAATCAACGATGTGATTTCTGGAAGGGGTCCCATCATTCATACAAGATGCTTATCAGATTACTCGTTATCGAGTGTCGTCAAGACGGAACTGGATTAA 3066 0.4305 MEKPRRPFDRSKEPILKRPRLIENPDRAPNSSVRPIQQRKQVNSGISTLSSASRFRQNDRELESSDFDGGGYEPQPIRFEDLVAQYKSALAELTFNSKPMITNLTIIAGENQAGQKAIAATICANILEVPSEQKLPSLYLLDSIVKNIGQDYIKYFAAKLPEVFCKAYKQVDPSVRQSMKHLFGTWKGVFPPQTLQIIDKELGFTPVINGSSSASTALRSDSQSKHSPHSIHVNPKYFERQRLQQSSRTKGVVGDMTGAIANSNDDHEMTDRDLGVARAWNNQRTHRDPFNDSVPEKSISASYEDNEHGSNLSRNLGMGIGRTDGRVAKLGHRNLSSKAAAGVSGTISGQRNSVGLKHSFSNTEASMHQPIRNIAGIQRNVISSSWQNSEEEEYSWDEMNTGLTGHGVRNNLGNDAWTADDENLEAEDNHHQIRNVFRANVDREMPNRSQATEKKQSHAFQHHPSLSWQLQEQQSIDALDRKPGHLEGSMLMSGSLPANASSSAARMGNRAFLPNARIGLAEIEGQQFHSVGSESPSGQSPLRHRSPSPPSIDHSHLMKSLAMQDHPHTRKTSHFLGGLHSQYNEDSSPTLAPNIHVGDLRRSSQLKDLQGPLPSSGFQPRYQQQLSSSHAEVTIETEKPPLSKVSLARKTSEQPATSHTKAASVKNGTFSNMPTTSSLPSLLGARPSQSGGSSHAKIISSVSVNVSPSSPVLPKRPQRKAGQPLRTSTLSPASSNVSSASAQSSGATNHTSNPLANLLSSLVAKGLISTVTETPAEVPPETLTRLEDHCDSFSTSSSMPVASLSGSAAVPIPSTKDELDDTAKTPMSLSESTSTDIRNVIGFEFKPNVIRKLHPSVISGLFDDFPHHCSICGLKLKFQEQFNRHLEWHATRERECTGLITASRWYLKSSDWVAGKAECPSENEFTDSLDSQDSETDKDQEDAMVLADENQCLCVLCGELFEDVYCHENSEWMFKAAVYMTNADIATEVGINDVISGRGPIIHTRCLSDYSLSSVVKTELD* 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2071 1021 MobiDBLite consensus disorder prediction 528 555 - -
Mtr1g2071 1021 MobiDBLite consensus disorder prediction 608 634 - -
Mtr1g2071 1021 MobiDBLite consensus disorder prediction 528 546 - -
Mtr1g2071 1021 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 1 1018 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Mtr1g2071 1021 ProSitePatterns Zinc finger C2H2 type domain signature. 869 889 IPR013087 -
Mtr1g2071 1021 MobiDBLite consensus disorder prediction 607 752 - -
Mtr1g2071 1021 ProSiteProfiles CID domain profile. 78 206 IPR006569 -
Mtr1g2071 1021 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 1 1018 - -
Mtr1g2071 1021 MobiDBLite consensus disorder prediction 804 831 - -
Mtr1g2071 1021 Gene3D - 76 203 IPR008942 -
Mtr1g2071 1021 MobiDBLite consensus disorder prediction 443 467 - -
Mtr1g2071 1021 MobiDBLite consensus disorder prediction 483 502 - -
Mtr1g2071 1021 MobiDBLite consensus disorder prediction 722 752 - -
Mtr1g2071 1021 MobiDBLite consensus disorder prediction 575 591 - -
Mtr1g2071 1021 MobiDBLite consensus disorder prediction 647 712 - -
Mtr1g2071 1021 MobiDBLite consensus disorder prediction 213 234 - -
Mtr1g2071 1021 SUPERFAMILY ENTH/VHS domain 81 200 IPR008942 -
Mtr1g2071 1021 CDD CID_Pcf11 83 195 - -
Mtr1g2071 1021 Pfam CID domain 87 196 IPR006569 -
Mtr1g2071 1021 MobiDBLite consensus disorder prediction 1 70 - -
Mtr1g2071 1021 SMART 558neu5 81 203 IPR006569 -
Mtr1g2071 1021 MobiDBLite consensus disorder prediction 30 55 - -
Mtr1g2071 1021 MobiDBLite consensus disorder prediction 1 24 - -
Mtr1g2071 1021 MobiDBLite consensus disorder prediction 569 595 - -
Mtr1g2071 1021 MobiDBLite consensus disorder prediction 213 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2071 Mtr-Chr1 30622098 30629121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2071 54 403 C2H2 Transcription Factor Family AT4G04885 38.636 1.29e-57 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr1g2071 CID 2.5e-14 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2071 K14400 - gmx:100807857 1174.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2071 1 30622098 30629121 Mtr1g2071 1 30622098 30629121 ECH
Mtr7g3196 7 48937203 48944200 Mtr1g2071 1 30622098 30629121 PCT