Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2067 ATGGATGACCACCATAACAATCATGGTCATCATCACCATCACCATCACCATCATCAACATCAACATCAACAACAATATGATCTAAGACAGCTAGTAAATGGAACAAGGTCAACCCATTTCCCATCTATACCGACAGCGGCTACGGATGAGTTTTTCTCCGGTCACCGGAATCTGACAGCTTTGTTAACTACTACTCATCCACAGACACATCAAAACCAGTATGAGATGATGATGTTAGGGCGTGGAGTAGTTCTTGAAGATTTCAATAGTATCACTACTCATGTACCACCACCACCTTCAACAACAATAACAACAGCAACCACCACTGCTAGTGCTAGTGTTTCAACTCCTGAGACCACAGGTTATATGGGTGGAGATGCATCCACTGGAAGATGGCCAAGACAAGAAACTCTTACTCTTCTTGAAATCAGATCTCGTCTTGACCCTAAATTTAAAGAAGCTAATCAAAAAGGTCCTTTATGGGATGAAGTCTCTAGGATAATGTCTGAAGAACATGCATATCAAAGGAGTGGAAAAAAGTGCAGAGAAAAATTTGAGAATCTGTACAAATATTACAAGAAGACAAAAGAAGGTAAAGCAGGAAGGCATGATGGTAAGCATTACAGGTTTTTTCGTCAACTTGAAGCTTTATATGGTGAAAACAGTAACCAAACTTCTCTACCAGAAACCAATTTTGTCAACAACAATAATTTCCATTTCCAACAAACAAGTAATAGCCAAAACCCTCACAATGATCATAGCCTCAGTCTCACTACTAACTCAACTGACTTTGAAATCGATACGTCGTCGTCTGATGATGGAAATGATGTGAAGGGAAAGAGGAAGAGTAGTGGAAGAAGAAGTTGGAAGGTGAAGATAAAAGACTTCATTGATGCACAAATGAAGAAGCTTGTGGAGAAGCAAGAGGAGTGGTTGAGTAAGCTTGTGAAAACACTTGAGGATAAGGAAAAGGAGAGGGCGTTAAGAGAAGAAGAGTGGAGGAAACAAGAGGCCAAAAGGGTAGAAAAAGAACAAAAGTTTTGGAGTAATGAGAGAGCATGGATTGAAGCAAGGGATGCTGCTTTAATGGAAGCTTTGAAGAATTTAGGAGGTAGAGAAATGGTTAAGGTTGAAGAAGCTCATGATCATAAGGGTGTAAATGTAATAACTGGAGCAGAGATTCAAAATCAAAATGAAGATGGGAGTGAAATCTTGAATAGTACTGTGAGAGGTTCTGATAATTGTACTCCAAGGGATGATTCTAAAGAAGGAAACAGAAAGAGAAAGGAGAGTTTTTACTTCAACAATAATGAACAATGTTCTATGTACAATCAAGGAAGTGGTTATTGTGATGTTAATGATCAAAGAGAGGAGATTGTGAAACTTCAAAGGAATGATCATGGTTCTTCACCTTCTGATTCTAATGTTGGAAATGTTGCTAATGGTGATACTTGCTTTCCTTTCATGATTAGTGAGGGTGGAAATTTGTGGGAGAATTTTGGCTTGAAGATCAATAAAGTAAACCAAAACCATTAA 1536 0.3848 MDDHHNNHGHHHHHHHHHQHQHQQQYDLRQLVNGTRSTHFPSIPTAATDEFFSGHRNLTALLTTTHPQTHQNQYEMMMLGRGVVLEDFNSITTHVPPPPSTTITTATTTASASVSTPETTGYMGGDASTGRWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMSEEHAYQRSGKKCREKFENLYKYYKKTKEGKAGRHDGKHYRFFRQLEALYGENSNQTSLPETNFVNNNNFHFQQTSNSQNPHNDHSLSLTTNSTDFEIDTSSSDDGNDVKGKRKSSGRRSWKVKIKDFIDAQMKKLVEKQEEWLSKLVKTLEDKEKERALREEEWRKQEAKRVEKEQKFWSNERAWIEARDAALMEALKNLGGREMVKVEEAHDHKGVNVITGAEIQNQNEDGSEILNSTVRGSDNCTPRDDSKEGNRKRKESFYFNNNEQCSMYNQGSGYCDVNDQREEIVKLQRNDHGSSPSDSNVGNVANGDTCFPFMISEGGNLWENFGLKINKVNQNH* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2067 511 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 32 410 - -
Mtr1g2067 511 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 421 501 - -
Mtr1g2067 511 Pfam Myb/SANT-like DNA-binding domain 131 217 IPR044822 -
Mtr1g2067 511 PANTHER - 32 410 - -
Mtr1g2067 511 PANTHER - 421 501 - -
Mtr1g2067 511 ProSiteProfiles Myb-like domain profile. 124 189 IPR001005 -
Mtr1g2067 511 MobiDBLite consensus disorder prediction 95 123 - -
Mtr1g2067 511 MobiDBLite consensus disorder prediction 8 22 - -
Mtr1g2067 511 MobiDBLite consensus disorder prediction 239 258 - -
Mtr1g2067 511 Gene3D - 132 194 - -
Mtr1g2067 511 MobiDBLite consensus disorder prediction 95 131 - -
Mtr1g2067 511 MobiDBLite consensus disorder prediction 1 26 - -
Mtr1g2067 511 MobiDBLite consensus disorder prediction 404 428 - -
Mtr1g2067 511 Coils Coil 312 332 - -
Mtr1g2067 511 MobiDBLite consensus disorder prediction 265 284 - -
Mtr1g2067 511 CDD GT1 131 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2067 Mtr-Chr1 30554752 30558122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2067 418 506 Trihelix Transcription Factor Family AT5G03680 34.906 6.78e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Mtr1g2067 Myb_DNA-bind_4 1.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2067 - - mtr:MTR_1g060990 953.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2067 1 30554752 30558122 Mtr1g2067 1 30554752 30558122 ECH
Mtr7g3200 7 48983843 48986545 Mtr1g2067 1 30554752 30558122 PCT