Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1998 ATGGATCTTTCAGAAACATCACTCTGGTGGACTCAACAACATCAACAACAACAACCGATGTTATTAGTCGAACCAACATCTTGGTCTCTCCATCACCACCAACCTCCATGGTTCAATTCTCAAATCCATGAAAACACACCCCATTACAACCTCAAAAACATAGAAGATGAAGAATTAGACACCACCACCACCGTCGTAGAACCCGAAGACGAAAAAGAATCAATGTTTGAGAAACCCTTAACTCCTTCTGACGTAGGAAAACTCAACCGTCTTGTTATCCCAAAACAATACGCTGAAAAATACTTTCCACTCGGCGGAGCAGACTCCGCCGAGTGCAAAGGACTTTTACTAAGTTTTGAAGATGAGTCAGGGAAGTGTTGGCGTTTCCGTTACTCTTATTGGAACAGTAGTCAAAGCTATGTTCTAACAAAAGGTTGGAGTCGTTATGTCAAAGATAAACGACTCGATGCTGGCGATGTCGTTCTGTTTGAACGACATCGTGTTGATAGTCAGAGACTTTTTATCAACTGGAGGAGGAGGAGTGGGGATGATCAGTCGGCTTATGTTAGCAGAGGAGTGGGACATCATGGTAAGGGTAGTGATGGGAATGGTAAGAATGAGGTTGTTAATGGTGTAGGGTGGTCCAGAGGGTTCTATTCTGCGCATGTTCCTTATCCTACGCATCATCATCAAGTCTTGCCATACCAACATGATCAATGTCTTCATGCAGGTAGAGGGTCCCAAAGTCAGAACCAAAGGACGAAACCGGTGGGAAATAGTTCAAGTTCAACTTCTAGTTCAAGGGTACTTAGGTTATTTGGGGTCAACATGGAATGCCAACCTGAACATGATTCTTCAACACCTCAATGTTCTTATGATAGTAACAATAATATGCCATTAACACAAGGTACTATAGATACCTACCAATATCATCAACCTTCTAATTCCAATTCTCACCCTCACGTGGTACGTCACCAACCATATTACTACTAG 993 0.426 MDLSETSLWWTQQHQQQQPMLLVEPTSWSLHHHQPPWFNSQIHENTPHYNLKNIEDEELDTTTTVVEPEDEKESMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLGGADSAECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRVDSQRLFINWRRRSGDDQSAYVSRGVGHHGKGSDGNGKNEVVNGVGWSRGFYSAHVPYPTHHHQVLPYQHDQCLHAGRGSQSQNQRTKPVGNSSSSTSSSRVLRLFGVNMECQPEHDSSTPQCSYDSNNNMPLTQGTIDTYQYHQPSNSNSHPHVVRHQPYYY* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1998 330 MobiDBLite consensus disorder prediction 244 267 - -
Mtr1g1998 330 Pfam B3 DNA binding domain 76 181 IPR003340 GO:0003677
Mtr1g1998 330 SUPERFAMILY DNA-binding pseudobarrel domain 72 184 IPR015300 -
Mtr1g1998 330 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 20 296 - -
Mtr1g1998 330 Gene3D - 66 191 IPR015300 -
Mtr1g1998 330 ProSiteProfiles B3 DNA-binding domain profile. 76 181 IPR003340 GO:0003677
Mtr1g1998 330 SMART B3_2 76 181 IPR003340 GO:0003677
Mtr1g1998 330 MobiDBLite consensus disorder prediction 311 330 - -
Mtr1g1998 330 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 20 296 IPR044800 GO:0003700
Mtr1g1998 330 CDD B3_DNA 75 171 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1998 Mtr-Chr1 29667652 29670119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1998 69 284 RAV Transcription Factor Family AT5G06250 52.232 1.05e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr1g1998 B3 2.3e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1998 - - cam:101511950 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1998 1 29667652 29670119 Mtr1g1998 1 29667652 29670119 ECH
Mtr7g3268 7 49745070 49747229 Mtr1g1998 1 29667652 29670119 PCT