Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1997 ATGGACAAAGATTCATCAACTTGTTTTCAAATTCCTCAGGAATATGAATGTGAGCCAAATTTTGACGATGAATTAAAGCCTAAGATTGGACAAGTATTTGATACATTAGATGAAGGTAAAAAATTTTATGAAAAATACGCACTCTCTGTCGGATTTAGTGTGCGTTCAGCATCATCGACTATAGATAAAAAAGGCGTGAAGCGTTGGAAGTATTTTGTTTGCTCGAAAGAGGGTTATTTGGCAAAGAAGAAGGATGATAAGGAGGAAAGTGAATCTACTGTCAAGGCTAGAAGAAGAAGGGCTTTAACAAGAGAAGGATGCAATGCAAATGTTGGTTTCAAATGGGTAGGGGAAAGTAAGTACGAGATAGCTCGATTTCATGAAAGCCATACCCATCCACTTGCTTCACCTATGAAGAGACCGTTTCTAAGGACTGCAAGGAAGGTTAATCCATTTCACAAAAGCTTATTACATGCATGTAGTAGAGCAAATATTGGACCTTCAAAAGCTTTCCACTTATTAAAAGAACAGTGTGGGGGTTATGAAAATGTTGGATGCACGCAGAGAGATCTTCAAAACTATTCCAGAGATTTAAAGTCTTTGAATAAAGATTCTGATGCACATGTTTTGATAGATTACTTTAGAAGAAAGCAAGAAGTTAATCCATCCTTTTATTATGCATATGAGGTAGGTGAAGAAGGCCGGCTGAAGCATGTTTTCTGGGCAGATGGTATTTGTAGGAAAAATTATTCCTTATTTGGGGATGTGGTTTCATTTGATACTACATATGAAACAAATATGTATCATTTAATTTTTGCACCTTTCACCGGGATAAACCATCATCGACAATCTATTACGTTCGGAGTAGGACTTATAACAAATGAGAAAAGTGATTCATTCGTATGGTTGTTTGAAAAGTTTTTGGAAGCAATGGGTGGACATAAGCCAACTCTTATAATAACCGATCAAGATCCTTCCATGAAAGTGGCTATAGAAAAGATTTTTGATACTTCTACTCATAGATTGTGCATGTGGCATATCATGAAAAAAGTTTCTGAAAAAGTAGGTGTGTCCATGAATGATGATGATGAGTTCAACAAAAGTTTCAAGTCATGTGTTTGGGGTTCAGAGACACCAAATGAGTTTGAAGAGACTTGGGCATTTTTTATGACAAGGTTCGAGTTAGAAAAGAATAAGTGGTTGTTACATATGTTTGAAATTCGAAGGATGTGGATCCCAGCATACTTCAAAGACACTTTTATGGCTGGGATATTGAGAACAACATCAAGATCAGAAAGTGAGAATTCTTTTTATGGTAATTTCCTGAATCCTAATGTTAACTTGGTTGAATTTTGGATGAGGTTTGATTCAGCAATAGAAGCGCAACGACAGAAGGAGTTACTGGCTGATAATAACTCTATTCATTCTAAACCAAAACTAAAGTTGGAACGTGGTATAGAGAGGCATGCAAGAGATGTTGGCGTATAA 1488 0.3629 MDKDSSTCFQIPQEYECEPNFDDELKPKIGQVFDTLDEGKKFYEKYALSVGFSVRSASSTIDKKGVKRWKYFVCSKEGYLAKKKDDKEESESTVKARRRRALTREGCNANVGFKWVGESKYEIARFHESHTHPLASPMKRPFLRTARKVNPFHKSLLHACSRANIGPSKAFHLLKEQCGGYENVGCTQRDLQNYSRDLKSLNKDSDAHVLIDYFRRKQEVNPSFYYAYEVGEEGRLKHVFWADGICRKNYSLFGDVVSFDTTYETNMYHLIFAPFTGINHHRQSITFGVGLITNEKSDSFVWLFEKFLEAMGGHKPTLIITDQDPSMKVAIEKIFDTSTHRLCMWHIMKKVSEKVGVSMNDDDEFNKSFKSCVWGSETPNEFEETWAFFMTRFELEKNKWLLHMFEIRRMWIPAYFKDTFMAGILRTTSRSESENSFYGNFLNPNVNLVEFWMRFDSAIEAQRQKELLADNNSIHSKPKLKLERGIERHARDVGV* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1997 495 Pfam FAR1 DNA-binding domain 41 135 IPR004330 -
Mtr1g1997 495 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 17 150 IPR031052 GO:0006355
Mtr1g1997 495 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 201 493 IPR031052 GO:0006355
Mtr1g1997 495 Pfam MULE transposase domain 256 350 IPR018289 -
Mtr1g1997 495 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE ISOFORM X1 201 493 - -
Mtr1g1997 495 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE ISOFORM X1 17 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1997 Mtr-Chr1 29642841 29645425 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr1g1997 FAR1 4.3e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1997 - - bvg:104891522 545.428