Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1994 ATGTCTCCCCCTCAGCCACGCTGCGTGAACCCAAAAATATGGCAAAGATGCGCTGGTGCCGGCGTCATAATTCCGAAGCTTCACTCTAAAGTCTACTACTTTCCAAAAGGTCACTTAGAACATGCTTGTACTTCTCCTAACGATCACACAATCAACATTATTAATCGTTACCGTCCATCCATTCCGTGCATCATCTCCACCGTCGATCTCCTTGCTGATCCTTACACTGATGAAGTCTTCGCCAAACTGCTCCTCACTCCCGTAACAGACGGTTTCATCCAAGAATCTCCCAGGGATACTGACCAAGAAGATAAGGGCGACGACAACGTTGTTTCTTTTGTGAAGATTCTCACAAAATCTGATTCTAACAACGCCATTGGATTCTCTGTACCTCGTGCTTGCGCTGACTTGATCTTACCGAAGCTTGAGTTTGAGGTTCCAATGCGGTCTCAGAAAATCTTTGTCACCGATGTTCAAGGTGAAGTCTGGAATTACAACCATACCTACCATGGGAAACCTAAGAGACACGTTTTAAACAATGGCTGGACTCTGTTTGTGAACAAGAAGAAACTCGTCGCTGGTGATTCTGTTGTTTTCATGAAAAACTTAGCTGGAAAGGTATTTGTTGGAATCCGCAGGCACATGAAGTTTGCTGCAGCTGAAGCAGCGGCAGTGCCGAAGGAGAAGTTAACTGAGAAAACGGTTATCAAGGCAGCAGAATTGGCCGAGAAGAGTATGGCATTTGAAGTTGTGTATTATCCGAGTCCTAATTGGAATGATTTTGTTGTGGATGCTAAAGTTGTTGATGAAGCAATCAAGATTAATTGGGAATCTGGAATGGGAGTTAAGCTTTCTTTGAAGAATGAAGAATCTTTAAGGATGAGATATGTTCAGCCTCAGGGAACAATCTCTAATGCTCTTTCTAATGTACCGAATTGGCGCATGCTTCAGGTTAATTGGGATGGACACGAAAACTTGCAGAATCAAAACCATGTCAATCCTTGGCAGGTTCAACTTATTTCCAAAGCACCTGAAATGTATCTACCATTTCCAACAAAAAGGCCTAGACTTGCTGAGGGTAACAATTTCTTGGAGGACAATTCAGTGGAAAGGTTAACTACCGTGTCAAAAGAGCTAAACACTGGTGGTCCTGCTTGCGATGACTTGTCGGCTCATAACCATAGTAGCTTGAACACTGTTGGCACAAAGTTTGTTGAGACCCATAACTGCAACACACAAATAGCTAGCTCTGGTTCAATAATGCTGTTTGGTAAGATCATACAGCCTGTTGAAGGCAATTTTCATGATCATGGTACCAAATTAGAGGCAACGACAACTAGAACAAATAGTGCTCAACAAGGTTTGGTTGCAAACAAGTAG 1380 0.4297 MSPPQPRCVNPKIWQRCAGAGVIIPKLHSKVYYFPKGHLEHACTSPNDHTINIINRYRPSIPCIISTVDLLADPYTDEVFAKLLLTPVTDGFIQESPRDTDQEDKGDDNVVSFVKILTKSDSNNAIGFSVPRACADLILPKLEFEVPMRSQKIFVTDVQGEVWNYNHTYHGKPKRHVLNNGWTLFVNKKKLVAGDSVVFMKNLAGKVFVGIRRHMKFAAAEAAAVPKEKLTEKTVIKAAELAEKSMAFEVVYYPSPNWNDFVVDAKVVDEAIKINWESGMGVKLSLKNEESLRMRYVQPQGTISNALSNVPNWRMLQVNWDGHENLQNQNHVNPWQVQLISKAPEMYLPFPTKRPRLAEGNNFLEDNSVERLTTVSKELNTGGPACDDLSAHNHSSLNTVGTKFVETHNCNTQIASSGSIMLFGKIIQPVEGNFHDHGTKLEATTTRTNSAQQGLVANK* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1994 459 Pfam Auxin response factor 238 314 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mtr1g1994 459 Pfam B3 DNA binding domain 113 214 IPR003340 GO:0003677
Mtr1g1994 459 SUPERFAMILY DNA-binding pseudobarrel domain 108 213 IPR015300 -
Mtr1g1994 459 SMART B3_2 113 215 IPR003340 GO:0003677
Mtr1g1994 459 Gene3D - 276 345 - -
Mtr1g1994 459 Gene3D - 110 215 IPR015300 -
Mtr1g1994 459 PANTHER AUXIN RESPONSE FACTOR 358 442 - -
Mtr1g1994 459 PANTHER AUXIN RESPONSE FACTOR 6 223 - -
Mtr1g1994 459 PANTHER AUXIN RESPONSE FACTOR 227 357 - -
Mtr1g1994 459 CDD B3_DNA 112 213 IPR003340 GO:0003677
Mtr1g1994 459 ProSiteProfiles B3 DNA-binding domain profile. 113 215 IPR003340 GO:0003677
Mtr1g1994 459 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 358 442 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr1g1994 459 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 223 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr1g1994 459 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 227 357 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1994 Mtr-Chr1 29594901 29596945 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1994 1 372 B3 DNA Binding Superfamily AT1G77850 40.284 7.18e-99 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mtr1g1994 B3 6e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1994 - - cam:101503141 417.157