Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1981 ATGGATTCATCATCAATTCCAGATTGTGTCGATAAATGGGTGAACAATATCCATGAACAAAATGTTCATCACGAGAAAGAAAGTATTGCCAATAGTGGACCTCACTTGGGAATGCAGTTTGAATCTGAGGCGGTGGCATATGAATTTTATAATGATTACAGTAAAAGAATTGGATTTGGTATTCGTCGAGAATATGGAAATAAAAGCAGAATAGATGGAGTTTTGACTTCGAGAAGATTCACATGCTTCAAAGAGGGTGCGCGAGTTGTTGACAAAAGACGTCAACCGACGGCGGAGTCTAGAGCAGAAACCAGAACAGGATGCACAGCGCGTATGGTTATTTCACTTGATCGAAAGATAGGGAAGTATTGA 372 0.4005 MDSSSIPDCVDKWVNNIHEQNVHHEKESIANSGPHLGMQFESEAVAYEFYNDYSKRIGFGIRREYGNKSRIDGVLTSRRFTCFKEGARVVDKRRQPTAESRAETRTGCTARMVISLDRKIGKY* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1981 123 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 12 123 - -
Mtr1g1981 123 Pfam FAR1 DNA-binding domain 48 118 IPR004330 -
Mtr1g1981 123 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 12 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1981 Mtr-Chr1 29464732 29465103 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr1g1981 FAR1 5.5e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1981 - K17604 mtr:MTR_1g057920 253.447