Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1973 ATGGCAACATATTTTCATAATAATTCAGAAATCCAAGGTGGTTCTGACGGCCTTCAAACACTCATTTTCATGAACCCATCAGGTTACATCAATTACTCCGACGCGCCGCAACCGCCGCCACACGCCGGTAACCTTGTTTTTCTCAATTCAGCCGCCAATCACCCCGGCAACACTTCCCTCCACCACCAACAACAACAGAGTCTATCTCACGCGCCACCACAGTTTGTCGGGGTCCCGCTCTCGGCAGAACAACAATCAGTACATGCCCATCATGACGTTTCCGCTTTGCATGGCTTCCCACCGCGCATGCAGTACAACATGTGGAACCCCGCCGACCCTAATTCAGCGGCGCGTGAAGCCACACGCGCTACTCAGGGACTGTCATTAAGCTTACATGCTCAAGGGTCGGGCGAGGACACGCGTGTTCCCGTTGGTGGGTCGGGTTCCTCTGCTTCGAACGGTGTTTCGGGGATACAGAGTGTGTTATTGAGTTCTAAGTATTTGAAAGCTACACAAGAGTTACTTGATGAAGTTGTTAATGTTAATGGTGGGATTAAGGTTGAAAATGTTAAGAAGAGTTTTGAGAAAAATAAGGTTGTTGGAGAATCTTCAACTGCGGTTAGTGGAGAAGGTGGTTCTGTTGGTGGTGATGGAAATGGAAAACGTAGCACTGAGTTATCAACTACAGAGAGACAAGAAATTCAGATGAAGAAAGCTAAGTTAATTAACATGCTTGATGAGGTGGAACAAAGATACAGACAATATCACAACCAAATGCAGATGGTGATTTCCTCATTTGAACAAGTTGCAGGAATTGGTTCAGCAAGAACCTACACTGCCCTAGCACTACAAACAATCTCCAAGCAATTTCGATGTTTAAAAGATGCAATTACCGGCCAAATTAGAGCTGCAAATAAAAGCTTAGGAGAAGATGATAGCTTTGGTGGCAAAATTGAAGGGTCCAGGCTCAAATATGTTGATCATCATTTAAGACAACAAAGAGCTATTCAACAATTGGGAATGATTCATCATAATGCTTGGAGACCTCAAAGAGGATTGCCCGAAAGATCTGTTTCTGTTCTTCGTGCTTGGCTTTTCGAACATTTTCTCCATCCTTATCCCAAGGATTCAGACAAACACATGCTTGCAAAGCAAACAGGACTTACTAGGAGCCAGGTTTCAAATTGGTTCATAAATGCTCGAGTTCGTCTTTGGAAACCAATGGTGGAAGAAATGTACATGGAAGAGATGAAGGATCAAGAGCTGAATGGTTCCGAGGACAACAAATCAAGCAAAAATACCGATGAAGATCCTTCGATGAAAACACCAACTCCACAAGAAAGAGTTCCAACCTCGGAAACAGAATCCAAAAGTTTCAATTCCAAACAAGACATTCCTATGGTTTCAGTTTCAACACCATCAACTTCACCTATTGGTGTGAATGTTAGAAACAATTCAGGATTCAGCTTCACAGAACTTGATGGAATAACACAAGCAAGTCCGAAGCGAACAAGGAACCACGAAATTCTTCAATCACCAAATCATGTGAAGTCCAATGAAACAACAGCTAATAATGAACAAATTTCAATGAAATTTGGTGATGATAGACAAAGTAGAGATGGTTATTGTTTCATGGGAAACCAAACTAATTTCATTGCTGGTTTCGGTCAATATCCAATGGAGGAAATCGGAAGATTTGATGCGGAACAATTTGCACCAAGGTTTTCAGGTAATAATAATGGTGTTTCACTCACTCTTGGTTTGCCTCATTGTGACACATTATCAGGAACACATCAAAGTTTTATGCCAAACCAAAACATTCAACTAGGAAGAAGATTGGACATTAGTGAAACTAATGAGTTTGGTGACTCTTCAGCTGCATTTGAGAGTATCAACATGCAGAATCCAAAGAGGTTTGCCGCACAATTGTTGCCGGATTTTGTGGCATAA 1950 0.4221 MATYFHNNSEIQGGSDGLQTLIFMNPSGYINYSDAPQPPPHAGNLVFLNSAANHPGNTSLHHQQQQSLSHAPPQFVGVPLSAEQQSVHAHHDVSALHGFPPRMQYNMWNPADPNSAAREATRATQGLSLSLHAQGSGEDTRVPVGGSGSSASNGVSGIQSVLLSSKYLKATQELLDEVVNVNGGIKVENVKKSFEKNKVVGESSTAVSGEGGSVGGDGNGKRSTELSTTERQEIQMKKAKLINMLDEVEQRYRQYHNQMQMVISSFEQVAGIGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEDDSFGGKIEGSRLKYVDHHLRQQRAIQQLGMIHHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEMKDQELNGSEDNKSSKNTDEDPSMKTPTPQERVPTSETESKSFNSKQDIPMVSVSTPSTSPIGVNVRNNSGFSFTELDGITQASPKRTRNHEILQSPNHVKSNETTANNEQISMKFGDDRQSRDGYCFMGNQTNFIAGFGQYPMEEIGRFDAEQFAPRFSGNNNGVSLTLGLPHCDTLSGTHQSFMPNQNIQLGRRLDISETNEFGDSSAAFESINMQNPKRFAAQLLPDFVA* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1973 649 Pfam Homeobox KN domain 364 403 IPR008422 GO:0003677|GO:0006355
Mtr1g1973 649 PANTHER HOMEOTIC PROTEIN, PUTATIVE-RELATED 10 608 - -
Mtr1g1973 649 SUPERFAMILY Homeodomain-like 348 414 IPR009057 -
Mtr1g1973 649 SMART prehox3 156 299 IPR006563 -
Mtr1g1973 649 MobiDBLite consensus disorder prediction 53 72 - -
Mtr1g1973 649 MobiDBLite consensus disorder prediction 419 436 - -
Mtr1g1973 649 MobiDBLite consensus disorder prediction 419 478 - -
Mtr1g1973 649 Pfam Associated with HOX 161 298 IPR006563 -
Mtr1g1973 649 MobiDBLite consensus disorder prediction 202 232 - -
Mtr1g1973 649 MobiDBLite consensus disorder prediction 437 478 - -
Mtr1g1973 649 SMART HOX_1 347 411 IPR001356 GO:0003677
Mtr1g1973 649 Coils Coil 231 258 - -
Mtr1g1973 649 MobiDBLite consensus disorder prediction 131 155 - -
Mtr1g1973 649 MobiDBLite consensus disorder prediction 53 74 - -
Mtr1g1973 649 Gene3D - 350 427 - -
Mtr1g1973 649 CDD homeodomain 347 407 IPR001356 GO:0003677
Mtr1g1973 649 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 10 608 - -
Mtr1g1973 649 ProSiteProfiles 'Homeobox' domain profile. 344 407 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1973 Mtr-Chr1 29393181 29398117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1973 1 649 Homeobox Transcription Factor Family AT2G35940 51.223 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Mtr1g1973 POX 1.5e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1973 - - gmx:100810851 946.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1973 1 29393181 29398117 Mtr1g1973 1 29393181 29398117 ECH