Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr1g1968 | ATGCCTCAAGGAGATCATATAGACCGTCACATAAAAGAATATGGCCGCCCTCTCGATTACGAAAACCGCAAGCGCAAGAGAGAGGCTCGTGAGGTTCACAACCACTCTAAAAAGGCCCAGAAGACTATTGGTCATAAGGGAAAGAGAAATGCCAAGAAAAATTATGCCGAGAAGGCACAGATGAAAAGGACTTTGGCCATGCATGAAGAGTCAACGTCTAGGCGCAAGGCTGATGATAATGTTCAGGAAGGAGCTGTTCCTGCTTATCTTTTGGATCGTGAAAACACGACCAGAGCAAAGATTCTCAGCAACACCATAAAGCAAAAGAGGAAGGAGAAGGCTGGGAAATGGGATGTTCCTCTACCTAAGGTACGTCCGGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGCACCGGTAAAAGAAAGACCAAGCAATGGAAGAGAATGGTTACAAAAGCTACATTTGTTGGGCCTGGTTTTACCAGAAAACCTCCAAAGTACGAGCGGTTCATTCGTCCTACTGGATTGCGTTTCACTAAAGCTCATGTCACTCATCCTGAACTTAAATGCACATTCAATCTTGAAATTATTGGAGTGAAGAAAAACCCTAATGGCCCCATGTACACTTCTCTTGGTGTCATTACCAGGGGATCTATAATTGAGGTGAATGTTAGCGAACTTGGTCTGGTTACACCTGCTGGGAAAGTTGTGTGGGGTAAATATGCCCAGGTTACCAACAACCCGGAAAATGATGGTTGCATCAATGCTGTTTTACTTGTTTAA | 783 | 0.4432 | MPQGDHIDRHIKEYGRPLDYENRKRKREAREVHNHSKKAQKTIGHKGKRNAKKNYAEKAQMKRTLAMHEESTSRRKADDNVQEGAVPAYLLDRENTTRAKILSNTIKQKRKEKAGKWDVPLPKVRPVAEDEMFKVVRTGKRKTKQWKRMVTKATFVGPGFTRKPPKYERFIRPTGLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITRGSIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV* | 261 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr1g1968 | 260 | CDD | NSA2 | 4 | 260 | IPR039411 | - | |
| Mtr1g1968 | 260 | Pfam | Ribosomal protein S8e | 35 | 259 | IPR022309 | - | |
| Mtr1g1968 | 260 | Gene3D | - | 178 | 260 | - | - | |
| Mtr1g1968 | 260 | PANTHER | RIBOSOME BIOGENESIS PROTEIN NSA2 HOMOLOG | 3 | 260 | IPR039411 | - | |
| Mtr1g1968 | 260 | PANTHER | BNAA10G30340D PROTEIN | 3 | 260 | - | - | |
| Mtr1g1968 | 260 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
| Mtr1g1968 | 260 | MobiDBLite | consensus disorder prediction | 1 | 81 | - | - | |
| Mtr1g1968 | 260 | MobiDBLite | consensus disorder prediction | 53 | 81 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mtr1g1968 | Mtr-Chr1 | 29292898 | 29296711 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mtr1g1968 | K14842 | - | gmx:100782398 | 477.633 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Mtr1g1968 | 1 | 29292898 | 29296711 | Mtr5g2785 | 5 | 36287442 | 36289937 | ECH | |
| Mtr1g1968 | 1 | 29292898 | 29296711 | Mtr1g1968 | 1 | 29292898 | 29296711 | ECH | |
| Mtr1g1968 | 1 | 29292898 | 29296711 | Mtr5g2351 | 5 | 30879598 | 30882345 | ECH | |
| Mtr1g1968 | 1 | 29292898 | 29296711 | Mtr3g1632 | 3 | 28324567 | 28327372 | ECH |