Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1952 ATGTCCGCTAACGCTGGACCTTCCGACCGTGGCTCGCCGATGCCGACCGGAGCACAGATTCGGCCGCCTTTGAAGCGTCATCTGGCGTTTGTTTCGACCAAGCCACCGTTTGCACCGACTGATGAGTATCATACTTTCGCTGCTGTTGATTCTAGGAAAGTCGCCGATCATGTCAATGAAGCCGTTATTGTTAGATCTCCGGTCATAAAGCGGAAGAATGGAATGAATGAAAGTGAAGGAGACTCGCAAAAGTCAAGTAACAGCCCTGGATACAATGCAATGAACAGCCCCTTTAAAACTCCTTTGTCTGCAAAAGGGGGAAGGGCAAACAAGTCAAGGGCATCCAAAGAAGGCAAATCATGTCCTCCAACACCTATCTCAAATGCTGGTTCCCCTTCCCCGCTTACTCCTGCTGGTAGCTGTCGTTATGACAGTTCCTTAGGTCTCTTGACAAAAAAGTTCATCCATTTGCTCAAGCGTGCTGAGGATGGTATTCTTGACTTAAATAAGGCAGCAGAAACTTTGCAGGTGCAAAAGAGGAGGATATATGACATAACTAATGTTTTGGAAGGCATTGGTCTCATCGAAAAGAATATCAAGAACAGAATATATTGGAAAGGAATTGAATCTTCTACGCCTGGTAATGTGGATGGTGATATCTCTTTGCTTAAGTCGGAAGTTGATAACCTTTCTCTGGAAGAGCAGAGACTAGATGATCAGATAAGGGAAATGCAAGAAAGACTGAGAGGTTTGAGCGAAGATGAAAACAACCAGAAGTTCCTTTTTGTGACTGAGGAAGATATTAAGGGCCTACCTTGCTTCCAGAATGAAACTTTGATAGCAATCAAAGCTCCGCATGGAACCACCTTGGAAGTTCCTGATCCTGAGGAAGCCGTTGACGAACTACAGCGGAGATATAGAATCATTCTAAGGAGCACAATGGGTCCAATTGATGTCTACCTTATCAGTCAATTTGAAGAGAAATTTGAAGAGATTAATGGTGCTGAGCCCCCCGCAAGCTTCCCTCTTGCTTCAAGTTCAGAGTCTAATGAGCAACAAGCGACAGAAATGGTACCTGCTGAATGCAGTGGAAAGGAACTTGAACCTCAAGCTCTGCTCTCTTCTCAGACATACTCTGATTTAAATGTTTCGCAAGAGTTTGCTGGGGGAATGATGAAGATTGTCCCTTCAGATGCTGATAATGATGCAGATTATTGGCTTCTATCAGATGCTGAAGTTAGCATAACAGATATGTGGAGAACAGATTCTAATGTTGATTGGAGTGGAGTGGACATGCTTCATCCTGACTTTGAAATGCTCTCGAGGCCACAAACTCCATCGCCGGGACTTGCAGAAGCACCATCGACTGTAGCTAACCCTAATCAGAGATGA 1392 0.4468 MSANAGPSDRGSPMPTGAQIRPPLKRHLAFVSTKPPFAPTDEYHTFAAVDSRKVADHVNEAVIVRSPVIKRKNGMNESEGDSQKSSNSPGYNAMNSPFKTPLSAKGGRANKSRASKEGKSCPPTPISNAGSPSPLTPAGSCRYDSSLGLLTKKFIHLLKRAEDGILDLNKAAETLQVQKRRIYDITNVLEGIGLIEKNIKNRIYWKGIESSTPGNVDGDISLLKSEVDNLSLEEQRLDDQIREMQERLRGLSEDENNQKFLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPEEAVDELQRRYRIILRSTMGPIDVYLISQFEEKFEEINGAEPPASFPLASSSESNEQQATEMVPAECSGKELEPQALLSSQTYSDLNVSQEFAGGMMKIVPSDADNDADYWLLSDAEVSITDMWRTDSNVDWSGVDMLHPDFEMLSRPQTPSPGLAEAPSTVANPNQR* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1952 463 Gene3D - 136 209 IPR036388 -
Mtr1g1952 463 MobiDBLite consensus disorder prediction 448 463 - -
Mtr1g1952 463 MobiDBLite consensus disorder prediction 1 25 - -
Mtr1g1952 463 Coils Coil 158 178 - -
Mtr1g1952 463 MobiDBLite consensus disorder prediction 69 137 - -
Mtr1g1952 463 MobiDBLite consensus disorder prediction 79 99 - -
Mtr1g1952 463 Coils Coil 220 254 - -
Mtr1g1952 463 Gene3D - 214 324 - -
Mtr1g1952 463 SUPERFAMILY "Winged helix" DNA-binding domain 142 205 IPR036390 -
Mtr1g1952 463 Pfam E2F/DP family winged-helix DNA-binding domain 144 207 IPR003316 GO:0005667|GO:0006355
Mtr1g1952 463 SUPERFAMILY E2F-DP heterodimerization region 220 324 IPR037241 -
Mtr1g1952 463 PANTHER TRANSCRIPTION FACTOR E2F 19 447 IPR015633 GO:0000978|GO:0006357
Mtr1g1952 463 Pfam E2F transcription factor CC-MB domain 223 323 IPR032198 GO:0046983
Mtr1g1952 463 SMART E2F_TDP_2 142 207 IPR003316 GO:0005667|GO:0006355
Mtr1g1952 463 CDD E2F_DD 220 324 IPR032198 GO:0046983
Mtr1g1952 463 MobiDBLite consensus disorder prediction 438 463 - -
Mtr1g1952 463 MobiDBLite consensus disorder prediction 121 137 - -
Mtr1g1952 463 PANTHER TRANSCRIPTION FACTOR E2FB 19 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1952 Mtr-Chr1 28888667 28894824 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1952 16 457 E2F-DP Transcription Factor Family AT2G36010 56.290 6.24e-168 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Mtr1g1952 E2F_CC-MB 2.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1952 K06620 - gmx:100811762 722.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1952 1 28888667 28894824 Mtr1g1952 1 28888667 28894824 ECH